Fabian Peter Hammerle
37548b27ce
CorticalParcellationStats: rename attribute `general_measurements` -> `whole_brain_measurements`
|
5 years ago | |
|---|---|---|
| freesurfer_stats | 5 years ago | |
| tests | 5 years ago | |
| .gitignore | 5 years ago | |
| .pylintrc | 5 years ago | |
| .style.yapf | 5 years ago | |
| Pipfile | 5 years ago | |
| Pipfile.lock | 5 years ago | |
| README.rst | 5 years ago | |
| setup.py | 5 years ago |
README.rst
freesurfer-stats
================
TODO add badges
Python Library to Read FreeSurfer's cortical parcellation anatomical statistics
Freesurfer https://surfer.nmr.mgh.harvard.edu/
Install
-------
.. code:: sh
pip3 install --user freesurfer-stats
Releases follow the `semantic versioning ` scheme.
Usage
-----
.. code:: python
>>> from freesurfer_stats import CorticalParcellationStats
>>> stats = CorticalParcellationStats.read('tests/subjects/fabian/stats/lh.aparc.DKTatlas.stats')
>>> stats.headers['CreationTime'].isoformat()
'2019-05-09T21:05:54+00:00'
>>> stats.headers['cvs_version']
'Id: mris_anatomical_stats.c,v 1.79 2016/03/14 15:15:34 greve Exp'
>>> stats.headers['cmdline'][:64]
'mris_anatomical_stats -th3 -mgz -cortex ../label/lh.cortex.label'
>>> stats.hemisphere
'left'
>>> stats.whole_brain_measurements['Estimated Total Intracranial Volume']
(1670487.274486, 'mm^3')
>>> stats.whole_brain_measurements['White Surface Total Area']
(98553.0, 'mm^2')
================
TODO add badges
Python Library to Read FreeSurfer's cortical parcellation anatomical statistics
Freesurfer https://surfer.nmr.mgh.harvard.edu/
Install
-------
.. code:: sh
pip3 install --user freesurfer-stats
Releases follow the `semantic versioning ` scheme.
Usage
-----
.. code:: python
>>> from freesurfer_stats import CorticalParcellationStats
>>> stats = CorticalParcellationStats.read('tests/subjects/fabian/stats/lh.aparc.DKTatlas.stats')
>>> stats.headers['CreationTime'].isoformat()
'2019-05-09T21:05:54+00:00'
>>> stats.headers['cvs_version']
'Id: mris_anatomical_stats.c,v 1.79 2016/03/14 15:15:34 greve Exp'
>>> stats.headers['cmdline'][:64]
'mris_anatomical_stats -th3 -mgz -cortex ../label/lh.cortex.label'
>>> stats.hemisphere
'left'
>>> stats.whole_brain_measurements['Estimated Total Intracranial Volume']
(1670487.274486, 'mm^3')
>>> stats.whole_brain_measurements['White Surface Total Area']
(98553.0, 'mm^2')