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Fabian Peter Hammerle 37548b27ce CorticalParcellationStats: rename attribute `general_measurements` -> `whole_brain_measurements` 5 years ago
freesurfer_stats 37548b27ce CorticalParcellationStats: rename attribute `general_measurements` -> `whole_brain_measurements` 5 years ago
tests 37548b27ce CorticalParcellationStats: rename attribute `general_measurements` -> `whole_brain_measurements` 5 years ago
.gitignore 994cf548d4 added CorticalParcellationStats.read() reading stats file headers 5 years ago
.pylintrc 7cd5af01f2 pylint: ignore missing-docstring 5 years ago
.style.yapf d8cf13e57b setup yapf (pep8 style) 5 years ago
Pipfile 994cf548d4 added CorticalParcellationStats.read() reading stats file headers 5 years ago
Pipfile.lock 994cf548d4 added CorticalParcellationStats.read() reading stats file headers 5 years ago
README.rst 37548b27ce CorticalParcellationStats: rename attribute `general_measurements` -> `whole_brain_measurements` 5 years ago
setup.py 994cf548d4 added CorticalParcellationStats.read() reading stats file headers 5 years ago

README.rst

freesurfer-stats
================

TODO add badges

Python Library to Read FreeSurfer's cortical parcellation anatomical statistics

Freesurfer https://surfer.nmr.mgh.harvard.edu/

Install
-------

.. code:: sh

pip3 install --user freesurfer-stats

Releases follow the `semantic versioning ` scheme.

Usage
-----

.. code:: python

>>> from freesurfer_stats import CorticalParcellationStats
>>> stats = CorticalParcellationStats.read('tests/subjects/fabian/stats/lh.aparc.DKTatlas.stats')
>>> stats.headers['CreationTime'].isoformat()
'2019-05-09T21:05:54+00:00'
>>> stats.headers['cvs_version']
'Id: mris_anatomical_stats.c,v 1.79 2016/03/14 15:15:34 greve Exp'
>>> stats.headers['cmdline'][:64]
'mris_anatomical_stats -th3 -mgz -cortex ../label/lh.cortex.label'
>>> stats.hemisphere
'left'
>>> stats.whole_brain_measurements['Estimated Total Intracranial Volume']
(1670487.274486, 'mm^3')
>>> stats.whole_brain_measurements['White Surface Total Area']
(98553.0, 'mm^2')