Fabian Peter Hammerle
fd0d97db8b
release v1.0.0
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2 years ago | |
|---|---|---|
| .github | 2 years ago | |
| pubmed_bibtex | 2 years ago | |
| tests | 2 years ago | |
| .gitignore | 5 years ago | |
| .pylintrc | 5 years ago | |
| CHANGELOG.md | 2 years ago | |
| COPYING | 4 years ago | |
| MANIFEST.in | 4 years ago | |
| Pipfile | 2 years ago | |
| Pipfile.lock | 2 years ago | |
| README.rst | 2 years ago | |
| mypy.ini | 2 years ago | |
| setup.py | 2 years ago |
README.rst
pubmed-bibtex
=============
.. image:: https://img.shields.io/badge/code%20style-black-000000.svg
:target: https://github.com/psf/black
.. image:: https://github.com/fphammerle/pubmed-bibtex/workflows/tests/badge.svg
:target: https://github.com/fphammerle/pubmed-bibtex/actions
.. image:: https://coveralls.io/repos/github/fphammerle/pubmed-bibtex/badge.svg?branch=master
:target: https://coveralls.io/github/fphammerle/pubmed-bibtex?branch=master
.. image:: https://img.shields.io/pypi/v/pubmed-bibtex.svg
:target: https://pypi.org/project/pubmed-bibtex/#history
.. image:: https://img.shields.io/pypi/pyversions/pubmed-bibtex.svg
:target: https://pypi.org/project/pubmed-bibtex/
Python Script & Module to Generate BibTeX Entries for PubMed
Publications
Utilizes the API of TeXMed, a BibTeX interface for PubMed.
TeXMed was written by Arne Muller https://www.bioinformatics.org/texmed/
Install
-------
.. code:: sh
pip3 install --user pubmed-bibtex
Usage
-----
.. code:: sh
$ pubmed-bibtex 31025164
@Article{pmid31025164,
Author="...",
Title="...",
Journal="...",
...
}
or
.. code:: python
from pubmed_bibtex import bibtex_entry_from_pmid
print(bibtex_entry_from_pmid(123456789))
Tests
-----
.. code:: sh
pip3 install --user pipenv
git clone https://github.com/fphammerle/pubmed-bibtex.git
cd pubmed-bibtex
pipenv run pylint freesurfer_surface
pipenv run pytest --cov=freesurfer_surface
=============
.. image:: https://img.shields.io/badge/code%20style-black-000000.svg
:target: https://github.com/psf/black
.. image:: https://github.com/fphammerle/pubmed-bibtex/workflows/tests/badge.svg
:target: https://github.com/fphammerle/pubmed-bibtex/actions
.. image:: https://coveralls.io/repos/github/fphammerle/pubmed-bibtex/badge.svg?branch=master
:target: https://coveralls.io/github/fphammerle/pubmed-bibtex?branch=master
.. image:: https://img.shields.io/pypi/v/pubmed-bibtex.svg
:target: https://pypi.org/project/pubmed-bibtex/#history
.. image:: https://img.shields.io/pypi/pyversions/pubmed-bibtex.svg
:target: https://pypi.org/project/pubmed-bibtex/
Python Script & Module to Generate BibTeX Entries for PubMed
Publications
Utilizes the API of TeXMed, a BibTeX interface for PubMed.
TeXMed was written by Arne Muller https://www.bioinformatics.org/texmed/
Install
-------
.. code:: sh
pip3 install --user pubmed-bibtex
Usage
-----
.. code:: sh
$ pubmed-bibtex 31025164
@Article{pmid31025164,
Author="...",
Title="...",
Journal="...",
...
}
or
.. code:: python
from pubmed_bibtex import bibtex_entry_from_pmid
print(bibtex_entry_from_pmid(123456789))
Tests
-----
.. code:: sh
pip3 install --user pipenv
git clone https://github.com/fphammerle/pubmed-bibtex.git
cd pubmed-bibtex
pipenv run pylint freesurfer_surface
pipenv run pytest --cov=freesurfer_surface