fphammerle/pubmed-bibtex @ 0.1.0

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Fabian Peter Hammerle 6770883931 coverage: ignore _TeXMedHtmlParser.error() (dummy implementation cause abstract)		5 years ago
pubmed_bibtex	5cfe36c2e5 coverage: ignore _TeXMedHtmlParser.error() (dummy implementation cause abstract)	5 years ago
tests	05644cb8ef set module version	5 years ago
.gitignore	b5c5646230 added setup.py & pipenv for development	5 years ago
.pylintrc	83b7919568 configure travis-ci: pipenv sync, pylint, pytest & report coverage to coveralls	5 years ago
.travis.yml	83b7919568 configure travis-ci: pipenv sync, pylint, pytest & report coverage to coveralls	5 years ago
MANIFEST.in	bfb07d009b convert readme to from markdown to rest (to support pypi)	5 years ago
Pipfile	b5c5646230 added setup.py & pipenv for development	5 years ago
Pipfile.lock	b5c5646230 added setup.py & pipenv for development	5 years ago
README.rst	bfb07d009b convert readme to from markdown to rest (to support pypi)	5 years ago
setup.py	bfb07d009b convert readme to from markdown to rest (to support pypi)	5 years ago

		
				README.rst
			
				pubmed-bibtex
=============

Python Script & Module to Generate BibTeX Entries for PubMed
Publications

Utilizes the API of TeXMed, a BibTeX interface for PubMed.

TeXMed was written by Arne Muller https://www.bioinformatics.org/texmed/

Install
-------

.. code:: sh

    pip3 install --user pubmed-bibtex

Usage
-----

.. code:: sh

    $ pubmed-bibtex 31025164
    @Article{pmid31025164,
       Author="...",
       Title="...",
       Journal="...",
       ...
    }

or

.. code:: python

    from pubmed_bibtex import bibtex_entry_from_pmid
    print(bibtex_entry_from_pmid(123456789))

Tests
-----

.. code:: sh

    pip3 install --user pipenv
    git clone https://github.com/fphammerle/pubmed-bibtex.git
    cd pubmed-bibtex
    pipenv run pylint freesurfer_surface
    pipenv run pytest --cov=freesurfer_surface