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5 سال پیش | |
---|---|---|
examples | 5 سال پیش | |
freesurfer_volume_reader | 5 سال پیش | |
tests | 5 سال پیش | |
.gitignore | 5 سال پیش | |
.pylintrc | 5 سال پیش | |
.travis.yml | 5 سال پیش | |
Pipfile | 5 سال پیش | |
Pipfile.lock | 5 سال پیش | |
README.md | 5 سال پیش | |
setup.py | 5 سال پیش |
Python script & library to read hippocampal subfield volumes computed by Freesurfer
https://surfer.nmr.mgh.harvard.edu/fswiki/HippocampalSubfields
pip3 install --user freesurfer-volume-reader
freesurfer-volume-reader --help
export SUBJECTS_DIR=/my/freesurfer/subjects
freesurfer-volume-reader
or
freesurfer-volume-reader /my/freesurfer/subjects
freesurfer-volume-reader /my/freesurfer/subjects /other/freesurfer/subjects
or
from freesurfer_volume_reader.freesurfer import HippocampalSubfieldsVolumeFile
for volume_file in HippocampalSubfieldsVolumeFile.find('/my/freesurfer/subjects'):
print(volume_file.read_volumes_mm3())
print(volume_file.read_volumes_dataframe())
pip3 install --user pipenv
git clone https://github.com/fphammerle/freesurfer-volume-reader.git
cd freesurfer-volume-reader
pipenv run pylint freesurfer_volume_reader
pipenv run pytest