Начало Каталог Помощ
Вход
fphammerle
/
freesurfer-volume-reader
огледало от https://github.com/fphammerle/freesurfer-volume-reader
1
0
Разклонения 0
Файлове Задачи 0 Уики

Няма описание

ИН на ревизия: 1d9c516b63
Клонове Маркери
freesurfer-volu...
ZIP TAR.GZ
Fabian Peter Hammerle 1d9c516b63 added ashs.HippocampalSubfieldsVolumeFile.__init__: parses an ASHS *volumes.txt filename преди 5 години
examples 8bfbe75024 move/rename read_hippocampal_volume_file_dataframe -> freesurfer.HippocampalSubfieldsVolumeFile.read_volumes_dataframe() преди 5 години
freesurfer_volume_reader 1d9c516b63 added ashs.HippocampalSubfieldsVolumeFile.__init__: parses an ASHS *volumes.txt filename преди 5 години
tests 1d9c516b63 added ashs.HippocampalSubfieldsVolumeFile.__init__: parses an ASHS *volumes.txt filename преди 5 години
.gitignore 5af1308d8e git ignore build/ & dist/ преди 5 години
.pylintrc 07b02d4e5b pylint: disable missing-docstring преди 5 години
.travis.yml 9f97bd4982 travis-ci: exclude pandas-version<=0.23 && python>=3.7 due to compile error преди 5 години
Pipfile 8fd97e7d69 added failing test covering invalid root path '/' преди 5 години
Pipfile.lock 8fd97e7d69 added failing test covering invalid root path '/' преди 5 години
README.md 8bfbe75024 move/rename read_hippocampal_volume_file_dataframe -> freesurfer.HippocampalSubfieldsVolumeFile.read_volumes_dataframe() преди 5 години
setup.py f00fbdee19 setup.py: fix description (1 line only), added long description преди 5 години

README.md

freesurfer-volume-reader

Build Status

Python script & library to read hippocampal subfield volumes computed by Freesurfer

https://surfer.nmr.mgh.harvard.edu/fswiki/HippocampalSubfields

Install

pip3 install --user freesurfer-volume-reader
freesurfer-volume-reader --help

Usage

export SUBJECTS_DIR=/my/freesurfer/subjects
freesurfer-volume-reader

or

freesurfer-volume-reader /my/freesurfer/subjects
freesurfer-volume-reader /my/freesurfer/subjects /other/freesurfer/subjects

or

from freesurfer_volume_reader.freesurfer import HippocampalSubfieldsVolumeFile

for volume_file in HippocampalSubfieldsVolumeFile.find('/my/freesurfer/subjects'):
    print(volume_file.read_volumes_mm3())
    print(volume_file.read_volumes_dataframe())

Tests

pip3 install --user pipenv
git clone https://github.com/fphammerle/freesurfer-volume-reader.git
cd freesurfer-volume-reader
pipenv run pylint freesurfer_volume_reader
pipenv run pytest