Home Explore Help
Register Sign In
fphammerle
/
freesurfer-stats
mirror of https://github.com/fphammerle/freesurfer-stats
1
0
Fork 0
Files Issues 0 Wiki
Tree: 5b1985b223
Branches Tags
freesurfer-stat...
/
tests
/
subjects
/
soichi
/
stats
/
aseg.stats

aseg.stats 9.4 KB
History Raw

123456789101112131415161718192021222324252627282930313233343536373839404142434445464748495051525354555657585960616263646566676869707172737475767778798081828384858687888990919293949596979899100101102103104105106107108109110111112113114115116117118119120121122123124 
  1. # Title Segmentation Statistics 
    2. 

  2. # 
    3. 

  3. # generating_program mri_segstats
    4. 

  4. # cvs_version 7.0.0
    5. 

  5. # cmdline mri_segstats --seed 1234 --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /usr/local/freesurfer/ASegStatsLUT.txt --subject output 
    6. 

  6. # sysname  Linux
    7. 

  7. # hostname nid00762
    8. 

  8. # machine  x86_64
    9. 

  9. # user     hayashis
    10. 

  10. # anatomy_type volume
    11. 

  11. # 
    12. 

  12. # SUBJECTS_DIR /N/dc2/scratch/hayashis/bigred3-workflows/5eb0689676c10ead933d673c/5eb068b076c10e7b013d673f
    13. 

  13. # subjectname output
    14. 

  14. # BrainVolStatsFixed-NotNeeded because voxelvolume=1mm3
    15. 

  15. # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1169408.000000, mm^3
    16. 

  16. # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 1157593.000000, mm^3
    17. 

  17. # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 9296.000000, mm^3
    18. 

  18. # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 232345.220912, mm^3
    19. 

  19. # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 222242.475246, mm^3
    20. 

  20. # Measure Cortex, CortexVol, Total cortical gray matter volume, 454587.696158, mm^3
    21. 

  21. # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 251589.500000, mm^3
    22. 

  22. # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 244895.500000, mm^3
    23. 

  23. # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 496485.000000, mm^3
    24. 

  24. # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 62428.000000, mm^3
    25. 

  25. # Measure TotalGray, TotalGrayVol, Total gray matter volume, 625759.696158, mm^3
    26. 

  26. # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 1023873.000000, mm^3
    27. 

  27. # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 1012058.000000, mm^3
    28. 

  28. # Measure Mask, MaskVol, Mask Volume, 1686052.000000, mm^3
    29. 

  29. # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.823275, unitless
    30. 

  30. # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.186998, unitless
    31. 

  31. # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 24, unitless
    32. 

  32. # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 25, unitless
    33. 

  33. # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 49, unitless
    34. 

  34. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1420434.160521, mm^3
    35. 

  35. # SegVolFile mri/aseg.mgz 
    36. 

  36. # SegVolFileTimeStamp  2020/05/04 22:14:04 
    37. 

  37. # ColorTable /usr/local/freesurfer/ASegStatsLUT.txt 
    38. 

  38. # ColorTableTimeStamp 2020/04/29 22:19:19 
    39. 

  39. # InVolFile  mri/norm.mgz 
    40. 

  40. # InVolFileTimeStamp  2020/05/04 19:28:46 
    41. 

  41. # InVolFrame 0 
    42. 

  42. # PVVolFile  mri/norm.mgz 
    43. 

  43. # PVVolFileTimeStamp  2020/05/04 19:28:46 
    44. 

  44. # Excluding Cortical Gray and White Matter
    45. 

  45. # ExcludeSegId 0 2 3 41 42 
    46. 

  46. # VoxelVolume_mm3 1 
    47. 

  47. # TableCol  1 ColHeader Index 
    48. 

  48. # TableCol  1 FieldName Index 
    49. 

  49. # TableCol  1 Units     NA 
    50. 

  50. # TableCol  2 ColHeader SegId 
    51. 

  51. # TableCol  2 FieldName Segmentation Id
    52. 

  52. # TableCol  2 Units     NA
    53. 

  53. # TableCol  3 ColHeader NVoxels 
    54. 

  54. # TableCol  3 FieldName Number of Voxels
    55. 

  55. # TableCol  3 Units     unitless
    56. 

  56. # TableCol  4 ColHeader Volume_mm3
    57. 

  57. # TableCol  4 FieldName Volume
    58. 

  58. # TableCol  4 Units     mm^3
    59. 

  59. # TableCol  5 ColHeader StructName
    60. 

  60. # TableCol  5 FieldName Structure Name
    61. 

  61. # TableCol  5 Units     NA
    62. 

  62. # TableCol  6 ColHeader normMean 
    63. 

  63. # TableCol  6 FieldName Intensity normMean
    64. 

  64. # TableCol  6 Units     MR
    65. 

  65. # TableCol  7 ColHeader normStdDev
    66. 

  66. # TableCol  7 FieldName Itensity normStdDev
    67. 

  67. # TableCol  7 Units     MR
    68. 

  68. # TableCol  8 ColHeader normMin
    69. 

  69. # TableCol  8 FieldName Intensity normMin
    70. 

  70. # TableCol  8 Units     MR
    71. 

  71. # TableCol  9 ColHeader normMax
    72. 

  72. # TableCol  9 FieldName Intensity normMax
    73. 

  73. # TableCol  9 Units     MR
    74. 

  74. # TableCol 10 ColHeader normRange
    75. 

  75. # TableCol 10 FieldName Intensity normRange
    76. 

  76. # TableCol 10 Units     MR
    77. 

  77. # NRows 45 
    78. 

  78. # NTableCols 10 
    79. 

  79. # ColHeaders  Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange  
    80. 

  80.   1   4      5077     5581.1  Left-Lateral-Ventricle            27.3055    15.4437     0.0000    88.0000    88.0000 
    81. 

  81.   2   5       132      195.5  Left-Inf-Lat-Vent                 53.1970     9.2625    37.0000    76.0000    39.0000 
    82. 

  82.   3   7     18074    18350.4  Left-Cerebellum-White-Matter      80.1782     9.0470    36.0000   106.0000    70.0000 
    83. 

  83.   4   8     54976    55868.4  Left-Cerebellum-Cortex            48.4004    10.9809     6.0000    98.0000    92.0000 
    84. 

  84.   5  10      8612     8178.8  Left-Thalamus                     83.3560    10.4341    27.0000   114.0000    87.0000 
    85. 

  85.   6  11      3824     3708.7  Left-Caudate                      70.4786     9.3153    30.0000    99.0000    69.0000 
    86. 

  86.   7  12      5776     5622.3  Left-Putamen                      83.7332     7.1692    43.0000   102.0000    59.0000 
    87. 

  87.   8  13      2124     2091.0  Left-Pallidum                     97.9812     3.8737    79.0000   110.0000    31.0000 
    88. 

  88.   9  14       679      741.0  3rd-Ventricle                     37.1487    15.2063     0.0000    78.0000    78.0000 
    89. 

  89.  10  15       875     1019.4  4th-Ventricle                     31.0811    14.2070     0.0000    76.0000    76.0000 
    90. 

  90.  11  16     21320    21011.7  Brain-Stem                        84.7268    12.0079    25.0000   140.0000   115.0000 
    91. 

  91.  12  17      4357     4333.5  Left-Hippocampus                  65.6167     8.2438    26.0000   108.0000    82.0000 
    92. 

  92.  13  18      1573     1549.1  Left-Amygdala                     64.1742     6.3122    41.0000    83.0000    42.0000 
    93. 

  93.  14  24       965     1007.5  CSF                               41.3772    12.8093     6.0000    68.0000    62.0000 
    94. 

  94.  15  26       731      718.7  Left-Accumbens-area               66.7989     5.7314    42.0000    86.0000    44.0000 
    95. 

  95.  16  28      4324     4125.1  Left-VentralDC                    91.7333    12.2516    31.0000   132.0000   101.0000 
    96. 

  96.  17  30         0        0.0  Left-vessel                        0.0000     0.0000     0.0000     0.0000     0.0000 
    97. 

  97.  18  31       419      356.7  Left-choroid-plexus               51.7375    15.3314    20.0000    80.0000    60.0000 
    98. 

  98.  19  43      3051     3370.2  Right-Lateral-Ventricle           35.5257    16.2240     0.0000    81.0000    81.0000 
    99. 

  99.  20  44       186      270.7  Right-Inf-Lat-Vent                46.6720    11.2473    14.0000    78.0000    64.0000 
    100. 

  100.  21  46     18717    19204.9  Right-Cerebellum-White-Matter     79.0736     9.2274    32.0000   106.0000    74.0000 
    101. 

  101.  22  47     53768    54076.3  Right-Cerebellum-Cortex           47.0445    10.8816    10.0000    92.0000    82.0000 
    102. 

  102.  23  49      7812     7387.3  Right-Thalamus                    80.6749     9.9149    37.0000   103.0000    66.0000 
    103. 

  103.  24  50      3740     3580.3  Right-Caudate                     73.5816     9.0473    37.0000   105.0000    68.0000 
    104. 

  104.  25  51      6114     5882.7  Right-Putamen                     82.4882     7.7199    62.0000   122.0000    60.0000 
    105. 

  105.  26  52      2201     2163.7  Right-Pallidum                    97.5766     3.9017    78.0000   108.0000    30.0000 
    106. 

  106.  27  53      4391     4328.9  Right-Hippocampus                 65.4297     8.8955    25.0000   120.0000    95.0000 
    107. 

  107.  28  54      1715     1665.5  Right-Amygdala                    63.4548     7.4180    31.0000    84.0000    53.0000 
    108. 

  108.  29  58       751      700.3  Right-Accumbens-area              68.9933     6.9871    49.0000    93.0000    44.0000 
    109. 

  109.  30  60      4383     4158.7  Right-VentralDC                   88.2469    12.5069    35.0000   131.0000    96.0000 
    110. 

  110.  31  62         0        0.0  Right-vessel                       0.0000     0.0000     0.0000     0.0000     0.0000 
    111. 

  111.  32  63       431      389.1  Right-choroid-plexus              54.3295    13.1272    26.0000    80.0000    54.0000 
    112. 

  112.  33  72         0        0.0  5th-Ventricle                      0.0000     0.0000     0.0000     0.0000     0.0000 
    113. 

  113.  34  77      2244     1880.1  WM-hypointensities                69.7460    12.6019    33.0000   102.0000    69.0000 
    114. 

  114.  35  78         0        0.0  Left-WM-hypointensities            0.0000     0.0000     0.0000     0.0000     0.0000 
    115. 

  115.  36  79         0        0.0  Right-WM-hypointensities           0.0000     0.0000     0.0000     0.0000     0.0000 
    116. 

  116.  37  80         0        0.0  non-WM-hypointensities             0.0000     0.0000     0.0000     0.0000     0.0000 
    117. 

  117.  38  81         0        0.0  Left-non-WM-hypointensities        0.0000     0.0000     0.0000     0.0000     0.0000 
    118. 

  118.  39  82         0        0.0  Right-non-WM-hypointensities       0.0000     0.0000     0.0000     0.0000     0.0000 
    119. 

  119.  40  85       152      139.0  Optic-Chiasm                      67.6645    10.3527    42.0000   107.0000    65.0000 
    120. 

  120.  41 251      1297     1197.2  CC_Posterior                      98.0948    12.6156    45.0000   113.0000    68.0000 
    121. 

  121.  42 252       707      631.7  CC_Mid_Posterior                  89.1471    17.0599    20.0000   115.0000    95.0000 
    122. 

  122.  43 253       886      789.6  CC_Central                        90.2009    16.9791    24.0000   119.0000    95.0000 
    123. 

  123.  44 254       905      809.6  CC_Mid_Anterior                   93.8497    17.3849    32.0000   127.0000    95.0000 
    124. 

  124.  45 255      1192     1124.7  CC_Anterior                      102.1720    12.2017    47.0000   126.0000    79.0000 
    125.