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- # Title Segmentation Statistics
- #
- # generating_program mri_segstats
- # cvs_version 7.0.0
- # cmdline mri_segstats --seed 1234 --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /usr/local/freesurfer/ASegStatsLUT.txt --subject output
- # sysname Linux
- # hostname nid00762
- # machine x86_64
- # user hayashis
- # anatomy_type volume
- #
- # SUBJECTS_DIR /N/dc2/scratch/hayashis/bigred3-workflows/5eb0689676c10ead933d673c/5eb068b076c10e7b013d673f
- # subjectname output
- # BrainVolStatsFixed-NotNeeded because voxelvolume=1mm3
- # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1169408.000000, mm^3
- # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 1157593.000000, mm^3
- # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 9296.000000, mm^3
- # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 232345.220912, mm^3
- # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 222242.475246, mm^3
- # Measure Cortex, CortexVol, Total cortical gray matter volume, 454587.696158, mm^3
- # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 251589.500000, mm^3
- # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 244895.500000, mm^3
- # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 496485.000000, mm^3
- # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 62428.000000, mm^3
- # Measure TotalGray, TotalGrayVol, Total gray matter volume, 625759.696158, mm^3
- # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 1023873.000000, mm^3
- # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 1012058.000000, mm^3
- # Measure Mask, MaskVol, Mask Volume, 1686052.000000, mm^3
- # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.823275, unitless
- # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.186998, unitless
- # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 24, unitless
- # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 25, unitless
- # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 49, unitless
- # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1420434.160521, mm^3
- # SegVolFile mri/aseg.mgz
- # SegVolFileTimeStamp 2020/05/04 22:14:04
- # ColorTable /usr/local/freesurfer/ASegStatsLUT.txt
- # ColorTableTimeStamp 2020/04/29 22:19:19
- # InVolFile mri/norm.mgz
- # InVolFileTimeStamp 2020/05/04 19:28:46
- # InVolFrame 0
- # PVVolFile mri/norm.mgz
- # PVVolFileTimeStamp 2020/05/04 19:28:46
- # Excluding Cortical Gray and White Matter
- # ExcludeSegId 0 2 3 41 42
- # VoxelVolume_mm3 1
- # TableCol 1 ColHeader Index
- # TableCol 1 FieldName Index
- # TableCol 1 Units NA
- # TableCol 2 ColHeader SegId
- # TableCol 2 FieldName Segmentation Id
- # TableCol 2 Units NA
- # TableCol 3 ColHeader NVoxels
- # TableCol 3 FieldName Number of Voxels
- # TableCol 3 Units unitless
- # TableCol 4 ColHeader Volume_mm3
- # TableCol 4 FieldName Volume
- # TableCol 4 Units mm^3
- # TableCol 5 ColHeader StructName
- # TableCol 5 FieldName Structure Name
- # TableCol 5 Units NA
- # TableCol 6 ColHeader normMean
- # TableCol 6 FieldName Intensity normMean
- # TableCol 6 Units MR
- # TableCol 7 ColHeader normStdDev
- # TableCol 7 FieldName Itensity normStdDev
- # TableCol 7 Units MR
- # TableCol 8 ColHeader normMin
- # TableCol 8 FieldName Intensity normMin
- # TableCol 8 Units MR
- # TableCol 9 ColHeader normMax
- # TableCol 9 FieldName Intensity normMax
- # TableCol 9 Units MR
- # TableCol 10 ColHeader normRange
- # TableCol 10 FieldName Intensity normRange
- # TableCol 10 Units MR
- # NRows 45
- # NTableCols 10
- # ColHeaders Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange
- 1 4 5077 5581.1 Left-Lateral-Ventricle 27.3055 15.4437 0.0000 88.0000 88.0000
- 2 5 132 195.5 Left-Inf-Lat-Vent 53.1970 9.2625 37.0000 76.0000 39.0000
- 3 7 18074 18350.4 Left-Cerebellum-White-Matter 80.1782 9.0470 36.0000 106.0000 70.0000
- 4 8 54976 55868.4 Left-Cerebellum-Cortex 48.4004 10.9809 6.0000 98.0000 92.0000
- 5 10 8612 8178.8 Left-Thalamus 83.3560 10.4341 27.0000 114.0000 87.0000
- 6 11 3824 3708.7 Left-Caudate 70.4786 9.3153 30.0000 99.0000 69.0000
- 7 12 5776 5622.3 Left-Putamen 83.7332 7.1692 43.0000 102.0000 59.0000
- 8 13 2124 2091.0 Left-Pallidum 97.9812 3.8737 79.0000 110.0000 31.0000
- 9 14 679 741.0 3rd-Ventricle 37.1487 15.2063 0.0000 78.0000 78.0000
- 10 15 875 1019.4 4th-Ventricle 31.0811 14.2070 0.0000 76.0000 76.0000
- 11 16 21320 21011.7 Brain-Stem 84.7268 12.0079 25.0000 140.0000 115.0000
- 12 17 4357 4333.5 Left-Hippocampus 65.6167 8.2438 26.0000 108.0000 82.0000
- 13 18 1573 1549.1 Left-Amygdala 64.1742 6.3122 41.0000 83.0000 42.0000
- 14 24 965 1007.5 CSF 41.3772 12.8093 6.0000 68.0000 62.0000
- 15 26 731 718.7 Left-Accumbens-area 66.7989 5.7314 42.0000 86.0000 44.0000
- 16 28 4324 4125.1 Left-VentralDC 91.7333 12.2516 31.0000 132.0000 101.0000
- 17 30 0 0.0 Left-vessel 0.0000 0.0000 0.0000 0.0000 0.0000
- 18 31 419 356.7 Left-choroid-plexus 51.7375 15.3314 20.0000 80.0000 60.0000
- 19 43 3051 3370.2 Right-Lateral-Ventricle 35.5257 16.2240 0.0000 81.0000 81.0000
- 20 44 186 270.7 Right-Inf-Lat-Vent 46.6720 11.2473 14.0000 78.0000 64.0000
- 21 46 18717 19204.9 Right-Cerebellum-White-Matter 79.0736 9.2274 32.0000 106.0000 74.0000
- 22 47 53768 54076.3 Right-Cerebellum-Cortex 47.0445 10.8816 10.0000 92.0000 82.0000
- 23 49 7812 7387.3 Right-Thalamus 80.6749 9.9149 37.0000 103.0000 66.0000
- 24 50 3740 3580.3 Right-Caudate 73.5816 9.0473 37.0000 105.0000 68.0000
- 25 51 6114 5882.7 Right-Putamen 82.4882 7.7199 62.0000 122.0000 60.0000
- 26 52 2201 2163.7 Right-Pallidum 97.5766 3.9017 78.0000 108.0000 30.0000
- 27 53 4391 4328.9 Right-Hippocampus 65.4297 8.8955 25.0000 120.0000 95.0000
- 28 54 1715 1665.5 Right-Amygdala 63.4548 7.4180 31.0000 84.0000 53.0000
- 29 58 751 700.3 Right-Accumbens-area 68.9933 6.9871 49.0000 93.0000 44.0000
- 30 60 4383 4158.7 Right-VentralDC 88.2469 12.5069 35.0000 131.0000 96.0000
- 31 62 0 0.0 Right-vessel 0.0000 0.0000 0.0000 0.0000 0.0000
- 32 63 431 389.1 Right-choroid-plexus 54.3295 13.1272 26.0000 80.0000 54.0000
- 33 72 0 0.0 5th-Ventricle 0.0000 0.0000 0.0000 0.0000 0.0000
- 34 77 2244 1880.1 WM-hypointensities 69.7460 12.6019 33.0000 102.0000 69.0000
- 35 78 0 0.0 Left-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 36 79 0 0.0 Right-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 37 80 0 0.0 non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 38 81 0 0.0 Left-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 39 82 0 0.0 Right-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 40 85 152 139.0 Optic-Chiasm 67.6645 10.3527 42.0000 107.0000 65.0000
- 41 251 1297 1197.2 CC_Posterior 98.0948 12.6156 45.0000 113.0000 68.0000
- 42 252 707 631.7 CC_Mid_Posterior 89.1471 17.0599 20.0000 115.0000 95.0000
- 43 253 886 789.6 CC_Central 90.2009 16.9791 24.0000 119.0000 95.0000
- 44 254 905 809.6 CC_Mid_Anterior 93.8497 17.3849 32.0000 127.0000 95.0000
- 45 255 1192 1124.7 CC_Anterior 102.1720 12.2017 47.0000 126.0000 79.0000
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