template-knitr/main.Rmd

```{r knitr_options, include=FALSE}
# knitr::knit imports knitr automatically
# rmarkdown::render does not import knitr automatically
library(knitr)
opts_chunk$set(fig.path='figures/')
```
<!-- https://yihui.name/knitr/options/ -->

# h1

```{sh}
date
git rev-parse --verify HEAD
git status --porcelain
```

## font style

**bold**
_italics_
*emph*
`code`

## list

### unordered

- a
- b

### numbered

1. a
2. b

## code

```cpp
int main() {
    return 0;
}
```

## quote

> quote

## links

[Fabian Peter Hammerle](http://fabian.hammerle.me/)

[Repository][1]

[//]: references
[1]: https://git.hammerle.me/fphammerle/template-markdown

## R

```{r}
1+1
```

Pi is `r pi`.

### plot

```{r}
plot(1:10)
```

\pagebreak

# Resources

[knitr in a knutshell](http://kbroman.org/knitr_knutshell/)

[using pander with knitr](http://rapporter.github.io/pander/knitr.html)

[pander options](http://rapporter.github.io/pander/#pander-options)

[CrossTable documentation](https://www.rdocumentation.org/packages/descr/versions/1.1.3/topics/CrossTable)

[R in clinical research](http://www.r-clinical-research.com/)

[using knitr and pandoc to create reproducible scientific reports](http://galahad.well.ox.ac.uk/repro/)

\pagebreak

# R session info

```{r session_info}
sessionInfo()
```