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- pubmed-bibtex
- =============
- .. image:: https://img.shields.io/badge/code%20style-black-000000.svg
- :target: https://github.com/psf/black
- .. image:: https://github.com/fphammerle/pubmed-bibtex/workflows/tests/badge.svg
- :target: https://github.com/fphammerle/pubmed-bibtex/actions
- .. image:: https://ipfs.io/ipfs/QmP8k5H4MkfspFxQxdL2kEZ4QQWQjF8xwPYD35KvNH4CA6/20230429T090002+0200/s3.amazonaws.com/assets.coveralls.io/badges/coveralls_100.svg
- :target: https://github.com/fphammerle/pubmed-bibtex/actions
- .. image:: https://img.shields.io/pypi/v/pubmed-bibtex.svg
- :target: https://pypi.org/project/pubmed-bibtex/#history
- .. image:: https://img.shields.io/pypi/pyversions/pubmed-bibtex.svg
- :target: https://pypi.org/project/pubmed-bibtex/
- Python Script & Module to Generate BibTeX Entries for PubMed
- Publications
- Utilizes the API of TeXMed, a BibTeX interface for PubMed.
- TeXMed was written by Arne Muller https://www.bioinformatics.org/texmed/
- pubmed-bibtex is currently unmaintained & archived cause TeXMed's exporter
- skips german umlaute & possibly other non-ascii characters
- (see `example <https://web.archive.org/web/20230512115423/https://www.bioinformatics.org/texmed/cgi-bin/list.cgi?PMID=31025164>`_)
- Install
- -------
- .. code:: sh
- pip3 install --user pubmed-bibtex
- Usage
- -----
- .. code:: sh
- $ pubmed-bibtex 31025164
- @Article{pmid31025164,
- Author="...",
- Title="...",
- Journal="...",
- ...
- }
- or
- .. code:: python
- from pubmed_bibtex import bibtex_entry_from_pmid
- print(bibtex_entry_from_pmid(123456789))
- Tests
- -----
- .. code:: sh
- pip3 install --user pipenv
- git clone https://github.com/fphammerle/pubmed-bibtex.git
- cd pubmed-bibtex
- pipenv run pylint freesurfer_surface
- pipenv run pytest --cov=freesurfer_surface
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