|
@@ -1,44 +0,0 @@
|
|
-# pubmed-bibtex
|
|
|
|
-
|
|
|
|
-Python Script & Module to Generate BibTeX Entries for PubMed Publications
|
|
|
|
-
|
|
|
|
-Utilizes the API of TeXMed, a BibTeX interface for PubMed.
|
|
|
|
-
|
|
|
|
-TeXMed was written by Arne Muller
|
|
|
|
-https://www.bioinformatics.org/texmed/
|
|
|
|
-
|
|
|
|
-## Install
|
|
|
|
-
|
|
|
|
-```sh
|
|
|
|
-pip3 install --user pubmed-bibtex
|
|
|
|
-```
|
|
|
|
-
|
|
|
|
-## Usage
|
|
|
|
-
|
|
|
|
-
|
|
|
|
-```sh
|
|
|
|
-$ pubmed-bibtex 31025164
|
|
|
|
-@Article{pmid31025164,
|
|
|
|
- Author="...",
|
|
|
|
- Title="...",
|
|
|
|
- Journal="...",
|
|
|
|
- ...
|
|
|
|
-}
|
|
|
|
-```
|
|
|
|
-
|
|
|
|
-or
|
|
|
|
-
|
|
|
|
-```python
|
|
|
|
-from pubmed_bibtex import bibtex_entry_from_pmid
|
|
|
|
-print(bibtex_entry_from_pmid(123456789))
|
|
|
|
-```
|
|
|
|
-
|
|
|
|
-## Tests
|
|
|
|
-
|
|
|
|
-```sh
|
|
|
|
-pip3 install --user pipenv
|
|
|
|
-git clone https://github.com/fphammerle/pubmed-bibtex.git
|
|
|
|
-cd pubmed-bibtex
|
|
|
|
-pipenv run pylint freesurfer_surface
|
|
|
|
-pipenv run pytest --cov=freesurfer_surface
|
|
|
|
-```
|
|
|