python.yml 6.3 KB

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  1. # sync with https://github.com/fphammerle/ical2vdir/blob/master/.github/workflows/python.yml
  2. # https://help.github.com/en/actions/reference/workflow-syntax-for-github-actions
  3. # shown in badge
  4. # https://help.github.com/en/actions/automating-your-workflow-with-github-actions/configuring-a-workflow#adding-a-workflow-status-badge-to-your-repository
  5. name: tests
  6. on:
  7. push:
  8. pull_request:
  9. schedule:
  10. - cron: '0 20 * * 5'
  11. jobs:
  12. code-format:
  13. runs-on: ubuntu-20.04
  14. steps:
  15. - uses: actions/checkout@v2.3.4
  16. - uses: actions/setup-python@v2.2.2
  17. with:
  18. python-version: '3.9'
  19. - run: pip install --upgrade pipenv==2020.8.13
  20. - run: pipenv install --python "$PYTHON_VERSION" --deploy --dev
  21. env:
  22. PYTHON_VERSION: ${{ matrix.python-version }}
  23. - run: pipenv graph
  24. - run: pipenv run black --check .
  25. tests:
  26. runs-on: ubuntu-20.04
  27. strategy:
  28. matrix:
  29. python-version:
  30. - '3.6'
  31. - '3.7'
  32. - '3.8'
  33. - '3.9'
  34. pandas-version:
  35. - '' # locked version
  36. - 0.21.*
  37. - 0.22.*
  38. - 0.23.*
  39. - 0.24.*
  40. - 0.25.*
  41. - 1.1.* # python3.6
  42. - 1.*
  43. exclude:
  44. # https://github.com/pandas-dev/pandas/commit/83807088329b2a7e6422e0d0ba460870a265d3d2#diff-60f61ab7a8d1910d86d9fda2261620314edcae5894d5aaa236b821c7256badd7R768
  45. - python-version: 3.6
  46. pandas-version: 1.*
  47. - python-version: 3.7
  48. pandas-version: 0.21.*
  49. - python-version: 3.7
  50. pandas-version: 0.22.*
  51. # > astroid.exceptions.AttributeInferenceError: '_constructor_expanddim' not found on <ClassDef.Series l.139 at 0x7f314baa6410>.
  52. # https://github.com/fphammerle/freesurfer-volume-reader/runs/1937182916
  53. - python-version: 3.7
  54. pandas-version: 1.1.*
  55. # >/tmp/pip-install-g4jx0np4/numpy/_configtest.c:6: undefined reference to `exp'
  56. # https://travis-ci.org/github/fphammerle/freesurfer-stats/jobs/683704331#L437
  57. - python-version: 3.8
  58. pandas-version: 0.21.*
  59. # https://travis-ci.org/github/fphammerle/freesurfer-stats/jobs/683704330#L437
  60. - python-version: 3.8
  61. pandas-version: 0.22.*
  62. # no python3.8 wheels for pandas v0.24.2 & v0.23.4 available
  63. # https://travis-ci.org/github/fphammerle/freesurfer-stats/builds/701952350
  64. # build takes longer than 10min
  65. # https://travis-ci.org/github/fphammerle/freesurfer-stats/jobs/702077404#L199
  66. - python-version: 3.8
  67. pandas-version: 0.23.*
  68. - python-version: 3.8
  69. pandas-version: 0.24.*
  70. # > astroid.exceptions.AttributeInferenceError: '_constructor_expanddim' not found on <ClassDef.Series l.139 at 0x7f314baa6410>.
  71. # https://github.com/fphammerle/freesurfer-volume-reader/runs/1937182916
  72. - python-version: 3.8
  73. pandas-version: 1.1.*
  74. - python-version: 3.9
  75. pandas-version: 0.21.*
  76. - python-version: 3.9
  77. pandas-version: 0.22.*
  78. - python-version: 3.9
  79. pandas-version: 0.23.*
  80. - python-version: 3.9
  81. pandas-version: 0.24.*
  82. # > Cython-generated file 'pandas/_libs/algos.c' not found.
  83. - python-version: 3.9
  84. pandas-version: 0.25.*
  85. fail-fast: false
  86. steps:
  87. - uses: actions/checkout@v2.3.4
  88. - uses: actions/setup-python@v2.2.2
  89. with:
  90. python-version: ${{ matrix.python-version }}
  91. - run: pip install --upgrade pipenv==2020.8.13
  92. # by default pipenv picks the latest version in PATH
  93. - run: pipenv --python "$(which python)" install --deploy --dev
  94. # `pipenv install --selective-upgrade "pandas==$PANDAS_VERSION"` was not effective
  95. - run: '[ -z "$PANDAS_VERSION" ] || pipenv run pip install "pandas==$PANDAS_VERSION"'
  96. env:
  97. PANDAS_VERSION: ${{ matrix.pandas-version }}
  98. - run: pipenv graph
  99. - run: pipenv run pytest --cov="$(cat *.egg-info/top_level.txt)" --cov-report=term-missing --cov-fail-under=100
  100. - run: pipenv run pylint --load-plugins=pylint_import_requirements "$(cat *.egg-info/top_level.txt)"
  101. # https://github.com/PyCQA/pylint/issues/352
  102. # disable parse-error due to:
  103. # > tests/resources/__init__.py:1:0: F0010: error while code parsing: Unable to load file tests/resources/__init__.py:
  104. # > [Errno 2] No such file or directory: 'tests/resources/__init__.py' (parse-error)
  105. - run: pipenv run pylint --disable=parse-error tests/*
  106. - run: pipenv run mypy "$(cat *.egg-info/top_level.txt)" tests
  107. # >=2.1.0 to support GITHUB_TOKEN
  108. # COVERALLS_REPO_TOKEN required manual configuration of secret
  109. # https://github.com/TheKevJames/coveralls-python/commit/f597109b62fadaf900af79d4f08a7debee5229e2
  110. - run: pip install 'coveralls>=2.1.0,<4'
  111. - run: coveralls
  112. env:
  113. GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
  114. # https://github.com/TheKevJames/coveralls-python/issues/240#issuecomment-758336355
  115. COVERALLS_SERVICE_NAME: github
  116. test-examples: # sync with https://github.com/fphammerle/freesurfer-surface/blob/dev/.github/workflows/python.yml#L73
  117. runs-on: ubuntu-18.04
  118. strategy:
  119. matrix:
  120. python-version:
  121. - '3.6'
  122. - '3.7'
  123. - '3.8'
  124. - '3.9'
  125. fail-fast: false
  126. defaults:
  127. run:
  128. working-directory: examples/
  129. steps:
  130. - uses: actions/checkout@v2.3.4
  131. - uses: actions/setup-python@v1
  132. with:
  133. python-version: ${{ matrix.python-version }}
  134. - run: pip install --upgrade pipenv==2020.8.13
  135. - run: pipenv --python "$(which python)" install --deploy --dev
  136. # > RuntimeError: module compiled against API version 0xe but this version of numpy is 0xd
  137. - run: python3 -c 'import sys; sys.exit(sys.version_info >= (3, 8))'
  138. || pipenv run pip install --no-deps numpy==1.20.1
  139. - run: pipenv graph
  140. # > the default behaviour is to abort conversion [...] if one of the cells throws an error
  141. - run: pipenv run jupyter nbconvert --execute --inplace *.ipynb
  142. # revert line specifying version of python interpreter
  143. - run: sudo apt-get update
  144. - run: sudo apt-get install --yes --no-install-recommends patchutils
  145. - run: git diff --unified=0 | grepdiff --output-matching=hunk '^ "version":' | patch --reverse
  146. - run: git diff --unified=0 | grepdiff --output-matching=hunk 'data:image/png;base64,' | patch --reverse
  147. - run: git diff --exit-code