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Fabian Peter Hammerle 9f97bd4982 travis-ci: exclude pandas-version<=0.23 && python>=3.7 due to compile error		5 жил өмнө
examples	dc771c0829 accept multiple args for positional param `root_dir_paths`	5 жил өмнө
freesurfer_volume_reader	a1c6387cb7 loosen pandas version constraint from >=0.24.0 to >=0.21.0	5 жил өмнө
tests	a1c6387cb7 loosen pandas version constraint from >=0.24.0 to >=0.21.0	5 жил өмнө
.pylintrc	07b02d4e5b pylint: disable missing-docstring	5 жил өмнө
.travis.yml	9f97bd4982 travis-ci: exclude pandas-version<=0.23 && python>=3.7 due to compile error	5 жил өмнө
Pipfile	8fd97e7d69 added failing test covering invalid root path '/'	5 жил өмнө
Pipfile.lock	8fd97e7d69 added failing test covering invalid root path '/'	5 жил өмнө
README.md	dc771c0829 accept multiple args for positional param `root_dir_paths`	5 жил өмнө
setup.py	a1c6387cb7 loosen pandas version constraint from >=0.24.0 to >=0.21.0	5 жил өмнө

freesurfer-volume-reader

Python script & library to read hippocampal subfield volumes computed by Freesurfer

https://surfer.nmr.mgh.harvard.edu/fswiki/HippocampalSubfields

Install

pip3 install --user freesurfer-volume-reader
freesurfer-volume-reader --help

Usage

export SUBJECTS_DIR=/my/freesurfer/subjects
freesurfer-volume-reader

freesurfer-volume-reader /my/freesurfer/subjects
freesurfer-volume-reader /my/freesurfer/subjects /other/freesurfer/subjects

from freesurfer_volume_reader import find_hippocampal_volume_files, \
                                     read_hippocampal_volume_file_dataframe

for volume_file_path in find_hippocampal_volume_files('/my/freesurfer/subjects'):
    print(read_hippocampal_volume_file_dataframe(volume_file_path))

Tests

pip3 install --user pipenv
git clone https://github.com/fphammerle/freesurfer-volume-reader.git
cd freesurfer-volume-reader
pipenv run pylint freesurfer_volume_reader
pipenv run pytest

README.md

freesurfer-volume-reader

Install

Usage

Tests