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freesurfer-volume-reader
mirror of https://github.com/fphammerle/freesurfer-volume-reader
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Fabian Peter Hammerle 85f35258c9 param `root_dir_path` default $SUBJECTS_DIR 6 years ago
freesurfer_volume_reader 85f35258c9 param `root_dir_path` default $SUBJECTS_DIR 6 years ago
tests 658cd31d97 recursively search for freesurfer's hippocampus volume files; csv output 6 years ago
Pipfile 658cd31d97 recursively search for freesurfer's hippocampus volume files; csv output 6 years ago
Pipfile.lock 658cd31d97 recursively search for freesurfer's hippocampus volume files; csv output 6 years ago
README.md 85f35258c9 param `root_dir_path` default $SUBJECTS_DIR 6 years ago
setup.py 658cd31d97 recursively search for freesurfer's hippocampus volume files; csv output 6 years ago

README.md

Usage

export SUBJECTS_DIR=/my/freesurfer/subjects
freesurfer-volume-reader

or

freesurfer-volume-reader /my/freesurfer/subjects

Tests

pip3 install --user pipenv
git clone https://github.com/fphammerle/freesurfer-volume-reader.git
cd freesurfer-volume-reader
pipenv run pylint freesurfer_volume_reader
pipenv run pytest