# sync with https://github.com/fphammerle/ical2vdir/blob/master/.github/workflows/python.yml # https://help.github.com/en/actions/reference/workflow-syntax-for-github-actions # shown in badge # https://help.github.com/en/actions/automating-your-workflow-with-github-actions/configuring-a-workflow#adding-a-workflow-status-badge-to-your-repository name: tests on: push: pull_request: schedule: - cron: '0 20 * * 5' jobs: code-format: runs-on: ubuntu-18.04 strategy: matrix: python-version: - 3.8 steps: - uses: actions/checkout@v1 - uses: actions/setup-python@v1 with: python-version: ${{ matrix.python-version }} - run: pip install --upgrade pipenv==2020.8.13 - run: pipenv install --python "$PYTHON_VERSION" --deploy --dev env: PYTHON_VERSION: ${{ matrix.python-version }} - run: pipenv graph - run: pipenv run black --check . tests: runs-on: ubuntu-18.04 strategy: matrix: python-version: - 3.5 - 3.6 - 3.7 - 3.8 - 3.9 pandas-version: - '' # locked version - 0.21.* - 0.22.* - 0.23.* - 0.24.* - 0.25.* - 1.1.* # python3.6 - 1.* exclude: # https://travis-ci.org/github/fphammerle/freesurfer-stats/jobs/683777317#L208 # https://github.com/pandas-dev/pandas/commit/18efcb27361478daa3118079ecb166c733691ecb#diff-2eeaed663bd0d25b7e608891384b7298R814 - python-version: 3.5 pandas-version: 1.* - python-version: 3.5 pandas-version: 1.1.* # https://github.com/pandas-dev/pandas/commit/83807088329b2a7e6422e0d0ba460870a265d3d2#diff-60f61ab7a8d1910d86d9fda2261620314edcae5894d5aaa236b821c7256badd7R768 - python-version: 3.6 pandas-version: 1.* - python-version: 3.7 pandas-version: 0.21.* - python-version: 3.7 pandas-version: 0.22.* # > astroid.exceptions.AttributeInferenceError: '_constructor_expanddim' not found on . # https://github.com/fphammerle/freesurfer-volume-reader/runs/1937182916 - python-version: 3.7 pandas-version: 1.1.* # >/tmp/pip-install-g4jx0np4/numpy/_configtest.c:6: undefined reference to `exp' # https://travis-ci.org/github/fphammerle/freesurfer-stats/jobs/683704331#L437 - python-version: 3.8 pandas-version: 0.21.* # https://travis-ci.org/github/fphammerle/freesurfer-stats/jobs/683704330#L437 - python-version: 3.8 pandas-version: 0.22.* # no python3.8 wheels for pandas v0.24.2 & v0.23.4 available # https://travis-ci.org/github/fphammerle/freesurfer-stats/builds/701952350 # build takes longer than 10min # https://travis-ci.org/github/fphammerle/freesurfer-stats/jobs/702077404#L199 - python-version: 3.8 pandas-version: 0.23.* - python-version: 3.8 pandas-version: 0.24.* # > astroid.exceptions.AttributeInferenceError: '_constructor_expanddim' not found on . # https://github.com/fphammerle/freesurfer-volume-reader/runs/1937182916 - python-version: 3.8 pandas-version: 1.1.* - python-version: 3.9 pandas-version: 0.21.* - python-version: 3.9 pandas-version: 0.22.* - python-version: 3.9 pandas-version: 0.23.* - python-version: 3.9 pandas-version: 0.24.* fail-fast: false steps: - uses: actions/checkout@v1 - uses: actions/setup-python@v1 with: python-version: ${{ matrix.python-version }} - run: pip install --upgrade pipenv==2020.8.13 - run: pipenv install --python "$PYTHON_VERSION" --deploy --dev env: PYTHON_VERSION: ${{ matrix.python-version }} # `pipenv install --selective-upgrade "pandas==$PANDAS_VERSION"` was not effective - run: '[ -z "$PANDAS_VERSION" ] || pipenv run pip install "pandas==$PANDAS_VERSION"' env: PANDAS_VERSION: ${{ matrix.pandas-version }} - run: pipenv graph - run: pipenv run pytest --cov="$(cat *.egg-info/top_level.txt)" --cov-report=term-missing --cov-fail-under=100 # https://github.com/PyCQA/pylint/issues/3882 - run: python3 -c 'import sys; sys.exit(sys.version_info < (3, 9))' || pipenv run pylint --load-plugins=pylint_import_requirements "$(cat *.egg-info/top_level.txt)" # https://github.com/PyCQA/pylint/issues/352 # disable parse-error due to: # > tests/resources/__init__.py:1:0: F0010: error while code parsing: Unable to load file tests/resources/__init__.py: # > [Errno 2] No such file or directory: 'tests/resources/__init__.py' (parse-error) - run: python3 -c 'import sys; sys.exit(sys.version_info < (3, 9))' || pipenv run pylint --disable=parse-error tests/* - run: pipenv run mypy "$(cat *.egg-info/top_level.txt)" tests # >=2.1.0 to support GITHUB_TOKEN # COVERALLS_REPO_TOKEN required manual configuration of secret # https://github.com/TheKevJames/coveralls-python/commit/f597109b62fadaf900af79d4f08a7debee5229e2 - run: pip install 'coveralls>=2.1.0,<4' - run: coveralls env: GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} # https://github.com/TheKevJames/coveralls-python/issues/240#issuecomment-758336355 COVERALLS_SERVICE_NAME: github test-examples: # sync with https://github.com/fphammerle/freesurfer-surface/blob/dev/.github/workflows/python.yml#L73 runs-on: ubuntu-18.04 strategy: matrix: python-version: - 3.5 - 3.6 - 3.7 - 3.8 - 3.9 fail-fast: false defaults: run: working-directory: examples/ steps: - uses: actions/checkout@v1 - uses: actions/setup-python@v1 with: python-version: ${{ matrix.python-version }} - run: pip install --upgrade pipenv==2020.8.13 - run: pipenv install --python "$PYTHON_VERSION" --deploy --dev env: PYTHON_VERSION: ${{ matrix.python-version }} # > RuntimeError: module compiled against API version 0xe but this version of numpy is 0xd - run: python3 -c 'import sys; sys.exit(sys.version_info >= (3, 8))' || pipenv run pip install --no-deps numpy==1.20.1 - run: pipenv graph # > the default behaviour is to abort conversion [...] if one of the cells throws an error - run: pipenv run jupyter nbconvert --execute --inplace *.ipynb # revert line specifying version of python interpreter - run: sudo apt-get update - run: sudo apt-get install --yes --no-install-recommends patchutils - run: git diff --unified=0 | grepdiff --output-matching=hunk '^ "version":' | patch --reverse - run: git diff --unified=0 | grepdiff --output-matching=hunk 'data:image/png;base64,' | patch --reverse - run: git diff --exit-code