 Fabian Peter Hammerle
|
3af0d701e7
setup.py: added missing pytest-cov dependency
|
5 years ago |
 Fabian Peter Hammerle
|
3f6dc3ba53
configure pytest to always create coverage report
|
5 years ago |
|
Fabian Peter Hammerle
|
43f43f806c
git ignore coverage data
|
5 years ago |
|
Fabian Peter Hammerle
|
88ea8b6f10
adapt ASHS bert dummy test data to fix tests failing inadvertently due different order of rows in frame
|
5 years ago |
|
Fabian Peter Hammerle
|
6f0484ee66
ignore pylint unexpected-keyword-arg for pandas<0.23
|
5 years ago |
|
Fabian Peter Hammerle
|
b667c9bd79
travis-ci: configure pytest to create coverage report
|
5 years ago |
|
Fabian Peter Hammerle
|
8bf88df3f6
test data: round volumes in subjects/all-hippocampal-volumes.csv to match precision in other csv files
|
5 years ago |
|
Fabian Peter Hammerle
|
c6ed274451
adapt ASHS bert dummy test data to fix tests failing inadvertently due different order of rows in frame
|
5 years ago |
|
Fabian Peter Hammerle
|
0bd50096fc
rename source type: `freesurfer` -> `freesurfer-hipposf`
|
5 years ago |
|
Fabian Peter Hammerle
|
65e9d507cd
adapt ASHS dummy test data to fix tests failing inadvertently due different order of rows in frame
|
5 years ago |
|
Fabian Peter Hammerle
|
2c7299438e
integration test against specifying both --ashs-filename-regex & --freesurfer-filename-regex
|
5 years ago |
|
Fabian Peter Hammerle
|
bf7feb5ba0
restore compatibility with pandas<0.23
|
5 years ago |
|
Fabian Peter Hammerle
|
526f05c29c
readme: fixed link list formatting
|
5 years ago |
|
Fabian Peter Hammerle
|
189dd5303c
script: added param --source-types to optionally enable collection of ASHS volumes files; added column `source_type`
|
5 years ago |
|
Fabian Peter Hammerle
|
f7b5c8b5f1
move remove_group_names_from_regex() to __init__.py
|
5 years ago |
|
Fabian Peter Hammerle
|
7ca94fde34
Merge branch 'ashs' of github.com:fphammerle/freesurfer-volume-reader
|
5 years ago |
|
Fabian Peter Hammerle
|
0635281aa4
refactor examples/barplot.py
|
5 years ago |
|
Fabian Peter Hammerle
|
10d0a331af
refactor examples/barplot.py: adapt variable names to fix pylint warnings
|
5 years ago |
|
Fabian Peter Hammerle
|
2e4132c892
adapt dummy test data to fix indeterministically failing test
|
5 years ago |
|
Fabian Peter Hammerle
|
898d71570b
extend docstring sample: chain Freesurfer & ASHS find() iterator
|
5 years ago |
|
Fabian Peter Hammerle
|
7781e8eda3
fix VolumeFile type hint for python<3.7
|
5 years ago |
|
Fabian Peter Hammerle
|
3915914774
fix VolumeFile.find() return type hint
|
5 years ago |
|
Fabian Peter Hammerle
|
5f546743fc
added ashs.HippocampalSubfieldsVolumeFile.read_volumes_dataframe()
|
5 years ago |
|
Fabian Peter Hammerle
|
fcf2db74f4
added sample code using ashs.HippocampalSubfieldsVolumeFile.find()
|
5 years ago |
|
Fabian Peter Hammerle
|
a0c0d5b52f
moved freesurfer.HippocampalSubfieldsVolumeFile.find() to VolumeFile.find()
|
5 years ago |
|
Fabian Peter Hammerle
|
0ca4226d54
added ashs.HippocampalSubfieldsVolumeFile.read_volumes_mm3()
|
5 years ago |
|
Fabian Peter Hammerle
|
111c081c3a
added abstract class VolumeFile
|
5 years ago |
|
Fabian Peter Hammerle
|
5eb2727163
fix pylint similarity warning
|
5 years ago |
|
Fabian Peter Hammerle
|
276b501c93
split __main__.py from __init__.py
|
5 years ago |
|
Fabian Peter Hammerle
|
1d9c516b63
added ashs.HippocampalSubfieldsVolumeFile.__init__: parses an ASHS *volumes.txt filename
|
5 years ago |
