 Fabian Peter Hammerle
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b667c9bd79
travis-ci: configure pytest to create coverage report
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5 years ago |
 Fabian Peter Hammerle
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8bf88df3f6
test data: round volumes in subjects/all-hippocampal-volumes.csv to match precision in other csv files
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5 years ago |
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Fabian Peter Hammerle
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c6ed274451
adapt ASHS bert dummy test data to fix tests failing inadvertently due different order of rows in frame
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5 years ago |
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Fabian Peter Hammerle
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0bd50096fc
rename source type: `freesurfer` -> `freesurfer-hipposf`
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5 years ago |
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Fabian Peter Hammerle
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65e9d507cd
adapt ASHS dummy test data to fix tests failing inadvertently due different order of rows in frame
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5 years ago |
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Fabian Peter Hammerle
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2c7299438e
integration test against specifying both --ashs-filename-regex & --freesurfer-filename-regex
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5 years ago |
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Fabian Peter Hammerle
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bf7feb5ba0
restore compatibility with pandas<0.23
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5 years ago |
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Fabian Peter Hammerle
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526f05c29c
readme: fixed link list formatting
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5 years ago |
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Fabian Peter Hammerle
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189dd5303c
script: added param --source-types to optionally enable collection of ASHS volumes files; added column `source_type`
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5 years ago |
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Fabian Peter Hammerle
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f7b5c8b5f1
move remove_group_names_from_regex() to __init__.py
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5 years ago |
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Fabian Peter Hammerle
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7ca94fde34
Merge branch 'ashs' of github.com:fphammerle/freesurfer-volume-reader
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5 years ago |
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Fabian Peter Hammerle
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0635281aa4
refactor examples/barplot.py
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5 years ago |
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Fabian Peter Hammerle
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10d0a331af
refactor examples/barplot.py: adapt variable names to fix pylint warnings
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5 years ago |
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Fabian Peter Hammerle
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2e4132c892
adapt dummy test data to fix indeterministically failing test
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5 years ago |
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Fabian Peter Hammerle
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898d71570b
extend docstring sample: chain Freesurfer & ASHS find() iterator
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5 years ago |
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Fabian Peter Hammerle
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7781e8eda3
fix VolumeFile type hint for python<3.7
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5 years ago |
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Fabian Peter Hammerle
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3915914774
fix VolumeFile.find() return type hint
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5 years ago |
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Fabian Peter Hammerle
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5f546743fc
added ashs.HippocampalSubfieldsVolumeFile.read_volumes_dataframe()
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5 years ago |
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Fabian Peter Hammerle
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fcf2db74f4
added sample code using ashs.HippocampalSubfieldsVolumeFile.find()
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5 years ago |
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Fabian Peter Hammerle
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a0c0d5b52f
moved freesurfer.HippocampalSubfieldsVolumeFile.find() to VolumeFile.find()
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5 years ago |
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Fabian Peter Hammerle
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0ca4226d54
added ashs.HippocampalSubfieldsVolumeFile.read_volumes_mm3()
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5 years ago |
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Fabian Peter Hammerle
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111c081c3a
added abstract class VolumeFile
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5 years ago |
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Fabian Peter Hammerle
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5eb2727163
fix pylint similarity warning
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5 years ago |
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Fabian Peter Hammerle
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276b501c93
split __main__.py from __init__.py
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5 years ago |
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Fabian Peter Hammerle
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1d9c516b63
added ashs.HippocampalSubfieldsVolumeFile.__init__: parses an ASHS *volumes.txt filename
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5 years ago |
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Fabian Peter Hammerle
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a2429f0481
refactor tests: import assert_volume_frames_equal instead of using fixture
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5 years ago |
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Fabian Peter Hammerle
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c9f4d33298
refactor tests: shared SUBJECTS_DIR across test modules
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5 years ago |
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Fabian Peter Hammerle
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4e994c2b0b
refactor: move pytest conftest.py to tests/
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5 years ago |
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Fabian Peter Hammerle
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0cb4c0141e
add python code sample to module docstrings
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5 years ago |
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Fabian Peter Hammerle
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8bfbe75024
move/rename read_hippocampal_volume_file_dataframe -> freesurfer.HippocampalSubfieldsVolumeFile.read_volumes_dataframe()
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5 years ago |
