Merge branch 'example-ashs'

https://github.com/fphammerle/freesurfer-volume-reader/pull/17

.gitignore

@@ -1,4 +1,5 @@
 .coverage
+.ipynb_checkpoints/
 build/
 dist/
 version.py

examples/Pipfile

@@ -5,12 +5,13 @@ name = "pypi"
 
 [packages]
 freesurfer-volume-reader = {editable = true, path = "./.."}
-pandas = "*"
+pandas = "<1"
-matplotlib = "*"
+matplotlib = "<4"
-seaborn = "*"
+seaborn = "<1"
+notebook = "<6"
 
 [dev-packages]
-pylint = ">=2.3.0"
+pylint = ">=2.3.0,<3"
 
 [requires]
 python_version = "3"

examples/Pipfile.lock

@@ -1,7 +1,7 @@
 {
     "_meta": {
         "hash": {
-            "sha256": "94e40b19654a4b576025e3b71130118fbc55f3b7f00faeab681d96d3cd356500"
+            "sha256": "44af26c0d569cb35ce1fe22948c430ebe601c355048b513cc35f39f54a5960ab"
         },
         "pipfile-spec": 6,
         "requires": {
@@ -16,6 +16,27 @@
         ]
     },
     "default": {
+        "attrs": {
+            "hashes": [
+                "sha256:69c0dbf2ed392de1cb5ec704444b08a5ef81680a61cb899dc08127123af36a79",
+                "sha256:f0b870f674851ecbfbbbd364d6b5cbdff9dcedbc7f3f5e18a6891057f21fe399"
+            ],
+            "version": "==19.1.0"
+        },
+        "backcall": {
+            "hashes": [
+                "sha256:38ecd85be2c1e78f77fd91700c76e14667dc21e2713b63876c0eb901196e01e4",
+                "sha256:bbbf4b1e5cd2bdb08f915895b51081c041bac22394fdfcfdfbe9f14b77c08bf2"
+            ],
+            "version": "==0.1.0"
+        },
+        "bleach": {
+            "hashes": [
+                "sha256:213336e49e102af26d9cde77dd2d0397afabc5a6bf2fed985dc35b5d1e285a16",
+                "sha256:3fdf7f77adcf649c9911387df51254b813185e32b2c6619f690b593a617e19fa"
+            ],
+            "version": "==3.1.0"
+        },
         "cycler": {
             "hashes": [
                 "sha256:1d8a5ae1ff6c5cf9b93e8811e581232ad8920aeec647c37316ceac982b08cb2d",
@@ -23,10 +44,87 @@
             ],
             "version": "==0.10.0"
         },
+        "decorator": {
+            "hashes": [
+                "sha256:86156361c50488b84a3f148056ea716ca587df2f0de1d34750d35c21312725de",
+                "sha256:f069f3a01830ca754ba5258fde2278454a0b5b79e0d7f5c13b3b97e57d4acff6"
+            ],
+            "version": "==4.4.0"
+        },
+        "defusedxml": {
+            "hashes": [
+                "sha256:6687150770438374ab581bb7a1b327a847dd9c5749e396102de3fad4e8a3ef93",
+                "sha256:f684034d135af4c6cbb949b8a4d2ed61634515257a67299e5f940fbaa34377f5"
+            ],
+            "version": "==0.6.0"
+        },
+        "entrypoints": {
+            "hashes": [
+                "sha256:589f874b313739ad35be6e0cd7efde2a4e9b6fea91edcc34e58ecbb8dbe56d19",
+                "sha256:c70dd71abe5a8c85e55e12c19bd91ccfeec11a6e99044204511f9ed547d48451"
+            ],
+            "version": "==0.3"
+        },
         "freesurfer-volume-reader": {
             "editable": true,
             "path": "./.."
         },
+        "ipykernel": {
+            "hashes": [
+                "sha256:0aeb7ec277ac42cc2b59ae3d08b10909b2ec161dc6908096210527162b53675d",
+                "sha256:0fc0bf97920d454102168ec2008620066878848fcfca06c22b669696212e292f"
+            ],
+            "version": "==5.1.0"
+        },
+        "ipython": {
+            "hashes": [
+                "sha256:54c5a8aa1eadd269ac210b96923688ccf01ebb2d0f21c18c3c717909583579a8",
+                "sha256:e840810029224b56cd0d9e7719dc3b39cf84d577f8ac686547c8ba7a06eeab26"
+            ],
+            "version": "==7.5.0"
+        },
+        "ipython-genutils": {
+            "hashes": [
+                "sha256:72dd37233799e619666c9f639a9da83c34013a73e8bbc79a7a6348d93c61fab8",
+                "sha256:eb2e116e75ecef9d4d228fdc66af54269afa26ab4463042e33785b887c628ba8"
+            ],
+            "version": "==0.2.0"
+        },
+        "jedi": {
+            "hashes": [
+                "sha256:2bb0603e3506f708e792c7f4ad8fc2a7a9d9c2d292a358fbbd58da531695595b",
+                "sha256:2c6bcd9545c7d6440951b12b44d373479bf18123a401a52025cf98563fbd826c"
+            ],
+            "version": "==0.13.3"
+        },
+        "jinja2": {
+            "hashes": [
+                "sha256:065c4f02ebe7f7cf559e49ee5a95fb800a9e4528727aec6f24402a5374c65013",
+                "sha256:14dd6caf1527abb21f08f86c784eac40853ba93edb79552aa1e4b8aef1b61c7b"
+            ],
+            "version": "==2.10.1"
+        },
+        "jsonschema": {
+            "hashes": [
+                "sha256:0c0a81564f181de3212efa2d17de1910f8732fa1b71c42266d983cd74304e20d",
+                "sha256:a5f6559964a3851f59040d3b961de5e68e70971afb88ba519d27e6a039efff1a"
+            ],
+            "version": "==3.0.1"
+        },
+        "jupyter-client": {
+            "hashes": [
+                "sha256:b5f9cb06105c1d2d30719db5ffb3ea67da60919fb68deaefa583deccd8813551",
+                "sha256:c44411eb1463ed77548bc2d5ec0d744c9b81c4a542d9637c7a52824e2121b987"
+            ],
+            "version": "==5.2.4"
+        },
+        "jupyter-core": {
+            "hashes": [
+                "sha256:927d713ffa616ea11972534411544589976b2493fc7e09ad946e010aa7eb9970",
+                "sha256:ba70754aa680300306c699790128f6fbd8c306ee5927976cbe48adacf240c0b7"
+            ],
+            "version": "==4.4.0"
+        },
         "kiwisolver": {
             "hashes": [
                 "sha256:05b5b061e09f60f56244adc885c4a7867da25ca387376b02c1efc29cc16bcd0f",
@@ -60,6 +158,39 @@
             ],
             "version": "==1.1.0"
         },
+        "markupsafe": {
+            "hashes": [
+                "sha256:00bc623926325b26bb9605ae9eae8a215691f33cae5df11ca5424f06f2d1f473",
+                "sha256:09027a7803a62ca78792ad89403b1b7a73a01c8cb65909cd876f7fcebd79b161",
+                "sha256:09c4b7f37d6c648cb13f9230d847adf22f8171b1ccc4d5682398e77f40309235",
+                "sha256:1027c282dad077d0bae18be6794e6b6b8c91d58ed8a8d89a89d59693b9131db5",
+                "sha256:24982cc2533820871eba85ba648cd53d8623687ff11cbb805be4ff7b4c971aff",
+                "sha256:29872e92839765e546828bb7754a68c418d927cd064fd4708fab9fe9c8bb116b",
+                "sha256:43a55c2930bbc139570ac2452adf3d70cdbb3cfe5912c71cdce1c2c6bbd9c5d1",
+                "sha256:46c99d2de99945ec5cb54f23c8cd5689f6d7177305ebff350a58ce5f8de1669e",
+                "sha256:500d4957e52ddc3351cabf489e79c91c17f6e0899158447047588650b5e69183",
+                "sha256:535f6fc4d397c1563d08b88e485c3496cf5784e927af890fb3c3aac7f933ec66",
+                "sha256:62fe6c95e3ec8a7fad637b7f3d372c15ec1caa01ab47926cfdf7a75b40e0eac1",
+                "sha256:6dd73240d2af64df90aa7c4e7481e23825ea70af4b4922f8ede5b9e35f78a3b1",
+                "sha256:717ba8fe3ae9cc0006d7c451f0bb265ee07739daf76355d06366154ee68d221e",
+                "sha256:79855e1c5b8da654cf486b830bd42c06e8780cea587384cf6545b7d9ac013a0b",
+                "sha256:7c1699dfe0cf8ff607dbdcc1e9b9af1755371f92a68f706051cc8c37d447c905",
+                "sha256:88e5fcfb52ee7b911e8bb6d6aa2fd21fbecc674eadd44118a9cc3863f938e735",
+                "sha256:8defac2f2ccd6805ebf65f5eeb132adcf2ab57aa11fdf4c0dd5169a004710e7d",
+                "sha256:98c7086708b163d425c67c7a91bad6e466bb99d797aa64f965e9d25c12111a5e",
+                "sha256:9add70b36c5666a2ed02b43b335fe19002ee5235efd4b8a89bfcf9005bebac0d",
+                "sha256:9bf40443012702a1d2070043cb6291650a0841ece432556f784f004937f0f32c",
+                "sha256:ade5e387d2ad0d7ebf59146cc00c8044acbd863725f887353a10df825fc8ae21",
+                "sha256:b00c1de48212e4cc9603895652c5c410df699856a2853135b3967591e4beebc2",
+                "sha256:b1282f8c00509d99fef04d8ba936b156d419be841854fe901d8ae224c59f0be5",
+                "sha256:b2051432115498d3562c084a49bba65d97cf251f5a331c64a12ee7e04dacc51b",
+                "sha256:ba59edeaa2fc6114428f1637ffff42da1e311e29382d81b339c1817d37ec93c6",
+                "sha256:c8716a48d94b06bb3b2524c2b77e055fb313aeb4ea620c8dd03a105574ba704f",
+                "sha256:cd5df75523866410809ca100dc9681e301e3c27567cf498077e8551b6d20e42f",
+                "sha256:e249096428b3ae81b08327a63a485ad0878de3fb939049038579ac0ef61e17e7"
+            ],
+            "version": "==1.1.1"
+        },
         "matplotlib": {
             "hashes": [
                 "sha256:1ae6549976b6ceb6ee426272a28c0fc9715b3e3669694d560c8f661c5b39e2c5",
@@ -79,6 +210,35 @@
             "index": "pypi",
             "version": "==3.0.3"
         },
+        "mistune": {
+            "hashes": [
+                "sha256:59a3429db53c50b5c6bcc8a07f8848cb00d7dc8bdb431a4ab41920d201d4756e",
+                "sha256:88a1051873018da288eee8538d476dffe1262495144b33ecb586c4ab266bb8d4"
+            ],
+            "version": "==0.8.4"
+        },
+        "nbconvert": {
+            "hashes": [
+                "sha256:138381baa41d83584459b5cfecfc38c800ccf1f37d9ddd0bd440783346a4c39c",
+                "sha256:4a978548d8383f6b2cfca4a3b0543afb77bc7cb5a96e8b424337ab58c12da9bc"
+            ],
+            "version": "==5.5.0"
+        },
+        "nbformat": {
+            "hashes": [
+                "sha256:b9a0dbdbd45bb034f4f8893cafd6f652ea08c8c1674ba83f2dc55d3955743b0b",
+                "sha256:f7494ef0df60766b7cabe0a3651556345a963b74dbc16bc7c18479041170d402"
+            ],
+            "version": "==4.4.0"
+        },
+        "notebook": {
+            "hashes": [
+                "sha256:573e0ae650c5d76b18b6e564ba6d21bf321d00847de1d215b418acb64f056eb8",
+                "sha256:f64fa6624d2323fbef6210a621817d6505a45d0d4a9367f1843b20a38a4666ee"
+            ],
+            "index": "pypi",
+            "version": "==5.7.8"
+        },
         "numpy": {
             "hashes": [
                 "sha256:0e2eed77804b2a6a88741f8fcac02c5499bba3953ec9c71e8b217fad4912c56c",
@@ -133,6 +293,63 @@
             "index": "pypi",
             "version": "==0.24.2"
         },
+        "pandocfilters": {
+            "hashes": [
+                "sha256:b3dd70e169bb5449e6bc6ff96aea89c5eea8c5f6ab5e207fc2f521a2cf4a0da9"
+            ],
+            "version": "==1.4.2"
+        },
+        "parso": {
+            "hashes": [
+                "sha256:17cc2d7a945eb42c3569d4564cdf49bde221bc2b552af3eca9c1aad517dcdd33",
+                "sha256:2e9574cb12e7112a87253e14e2c380ce312060269d04bd018478a3c92ea9a376"
+            ],
+            "version": "==0.4.0"
+        },
+        "pexpect": {
+            "hashes": [
+                "sha256:2094eefdfcf37a1fdbfb9aa090862c1a4878e5c7e0e7e7088bdb511c558e5cd1",
+                "sha256:9e2c1fd0e6ee3a49b28f95d4b33bc389c89b20af6a1255906e90ff1262ce62eb"
+            ],
+            "markers": "sys_platform != 'win32'",
+            "version": "==4.7.0"
+        },
+        "pickleshare": {
+            "hashes": [
+                "sha256:87683d47965c1da65cdacaf31c8441d12b8044cdec9aca500cd78fc2c683afca",
+                "sha256:9649af414d74d4df115d5d718f82acb59c9d418196b7b4290ed47a12ce62df56"
+            ],
+            "version": "==0.7.5"
+        },
+        "prometheus-client": {
+            "hashes": [
+                "sha256:1b38b958750f66f208bcd9ab92a633c0c994d8859c831f7abc1f46724fcee490"
+            ],
+            "version": "==0.6.0"
+        },
+        "prompt-toolkit": {
+            "hashes": [
+                "sha256:11adf3389a996a6d45cc277580d0d53e8a5afd281d0c9ec71b28e6f121463780",
+                "sha256:2519ad1d8038fd5fc8e770362237ad0364d16a7650fb5724af6997ed5515e3c1",
+                "sha256:977c6583ae813a37dc1c2e1b715892461fcbdaa57f6fc62f33a528c4886c8f55"
+            ],
+            "version": "==2.0.9"
+        },
+        "ptyprocess": {
+            "hashes": [
+                "sha256:923f299cc5ad920c68f2bc0bc98b75b9f838b93b599941a6b63ddbc2476394c0",
+                "sha256:d7cc528d76e76342423ca640335bd3633420dc1366f258cb31d05e865ef5ca1f"
+            ],
+            "markers": "os_name != 'nt'",
+            "version": "==0.6.0"
+        },
+        "pygments": {
+            "hashes": [
+                "sha256:5ffada19f6203563680669ee7f53b64dabbeb100eb51b61996085e99c03b284a",
+                "sha256:e8218dd399a61674745138520d0d4cf2621d7e032439341bc3f647bff125818d"
+            ],
+            "version": "==2.3.1"
+        },
         "pyparsing": {
             "hashes": [
                 "sha256:1873c03321fc118f4e9746baf201ff990ceb915f433f23b395f5580d1840cb2a",
@@ -140,6 +357,12 @@
             ],
             "version": "==2.4.0"
         },
+        "pyrsistent": {
+            "hashes": [
+                "sha256:5403d37f4d55ff4572b5b5676890589f367a9569529c6f728c11046c4ea4272b"
+            ],
+            "version": "==0.15.1"
+        },
         "python-dateutil": {
             "hashes": [
                 "sha256:7e6584c74aeed623791615e26efd690f29817a27c73085b78e4bad02493df2fb",
@@ -154,6 +377,36 @@
             ],
             "version": "==2019.1"
         },
+        "pyzmq": {
+            "hashes": [
+                "sha256:1651e52ed91f0736afd6d94ef9f3259b5534ce8beddb054f3d5ca989c4ef7c4f",
+                "sha256:5ccb9b3d4cd20c000a9b75689d5add8cd3bce67fcbd0f8ae1b59345247d803af",
+                "sha256:5e120c4cd3872e332fb35d255ad5998ebcee32ace4387b1b337416b6b90436c7",
+                "sha256:5e2a3707c69a7281a9957f83718815fd74698cba31f6d69f9ed359921f662221",
+                "sha256:63d51add9af8d0442dc90f916baf98fdc04e3b0a32afec4bfc83f8d85e72959f",
+                "sha256:65c5a0bdc49e20f7d6b03a661f71e2fda7a99c51270cafe71598146d09810d0d",
+                "sha256:66828fabe911aa545d919028441a585edb7c9c77969a5fea6722ef6e6ece38ab",
+                "sha256:7d79427e82d9dad6e9b47c0b3e7ae5f9d489b1601e3a36ea629bb49501a4daf3",
+                "sha256:824ee5d3078c4eae737ffc500fbf32f2b14e6ec89b26b435b7834febd70120cf",
+                "sha256:89dc0a83cccec19ff3c62c091e43e66e0183d1e6b4658c16ee4e659518131494",
+                "sha256:8b319805f6f7c907b101c864c3ca6cefc9db8ce0791356f180b1b644c7347e4c",
+                "sha256:90facfb379ab47f94b19519c1ecc8ec8d10813b69d9c163117944948bdec5d15",
+                "sha256:a0a178c7420021fc0730180a914a4b4b3092ce9696ceb8e72d0f60f8ce1655dd",
+                "sha256:a7a89591ae315baccb8072f216614b3e59aed7385aef4393a6c741783d6ee9cf",
+                "sha256:ba2578f0ae582452c02ed9fac2dc477b08e80ce05d2c0885becf5fff6651ccb0",
+                "sha256:c69b0055c55702f5b0b6b354133e8325b9a56dbc80e1be2d240bead253fb9825",
+                "sha256:ca434e1858fe222380221ddeb81e86f45522773344c9da63c311d17161df5e06",
+                "sha256:d4b8ecfc3d92f114f04d5c40f60a65e5196198b827503341521dda12d8b14939",
+                "sha256:d706025c47b09a54f005953ebe206f6d07a22516776faa4f509aaff681cc5468",
+                "sha256:d8f27e958f8a2c0c8ffd4d8855c3ce8ac3fa1e105f0491ce31729aa2b3229740",
+                "sha256:dbd264298f76b9060ce537008eb989317ca787c857e23cbd1b3ddf89f190a9b1",
+                "sha256:e926d66f0df8fdbf03ba20583af0f215e475c667fb033d45fd031c66c63e34c9",
+                "sha256:efc3bd48237f973a749f7312f68062f1b4ca5c2032a0673ca3ea8e46aa77187b",
+                "sha256:f59bc782228777cbfe04555707a9c56d269c787ed25d6d28ed9d0fbb41cb1ad2",
+                "sha256:f8da5322f4ff5f667a0d5a27e871b560c6637153c81e318b35cb012b2a98835c"
+            ],
+            "version": "==18.0.1"
+        },
         "scipy": {
             "hashes": [
                 "sha256:014cb900c003b5ac81a53f2403294e8ecf37aedc315b59a6b9370dce0aa7627a",
@@ -195,12 +448,66 @@
             "index": "pypi",
             "version": "==0.9.0"
         },
+        "send2trash": {
+            "hashes": [
+                "sha256:60001cc07d707fe247c94f74ca6ac0d3255aabcb930529690897ca2a39db28b2",
+                "sha256:f1691922577b6fa12821234aeb57599d887c4900b9ca537948d2dac34aea888b"
+            ],
+            "version": "==1.5.0"
+        },
         "six": {
             "hashes": [
                 "sha256:3350809f0555b11f552448330d0b52d5f24c91a322ea4a15ef22629740f3761c",
                 "sha256:d16a0141ec1a18405cd4ce8b4613101da75da0e9a7aec5bdd4fa804d0e0eba73"
             ],
             "version": "==1.12.0"
+        },
+        "terminado": {
+            "hashes": [
+                "sha256:d9d012de63acb8223ac969c17c3043337c2fcfd28f3aea1ee429b345d01ef460",
+                "sha256:de08e141f83c3a0798b050ecb097ab6259c3f0331b2f7b7750c9075ced2c20c2"
+            ],
+            "version": "==0.8.2"
+        },
+        "testpath": {
+            "hashes": [
+                "sha256:46c89ebb683f473ffe2aab0ed9f12581d4d078308a3cb3765d79c6b2317b0109",
+                "sha256:b694b3d9288dbd81685c5d2e7140b81365d46c29f5db4bc659de5aa6b98780f8"
+            ],
+            "version": "==0.4.2"
+        },
+        "tornado": {
+            "hashes": [
+                "sha256:1174dcb84d08887b55defb2cda1986faeeea715fff189ef3dc44cce99f5fca6b",
+                "sha256:2613fab506bd2aedb3722c8c64c17f8f74f4070afed6eea17f20b2115e445aec",
+                "sha256:44b82bc1146a24e5b9853d04c142576b4e8fa7a92f2e30bc364a85d1f75c4de2",
+                "sha256:457fcbee4df737d2defc181b9073758d73f54a6cfc1f280533ff48831b39f4a8",
+                "sha256:49603e1a6e24104961497ad0c07c799aec1caac7400a6762b687e74c8206677d",
+                "sha256:8c2f40b99a8153893793559919a355d7b74649a11e59f411b0b0a1793e160bc0",
+                "sha256:e1d897889c3b5a829426b7d52828fb37b28bc181cd598624e65c8be40ee3f7fa"
+            ],
+            "version": "==6.0.2"
+        },
+        "traitlets": {
+            "hashes": [
+                "sha256:9c4bd2d267b7153df9152698efb1050a5d84982d3384a37b2c1f7723ba3e7835",
+                "sha256:c6cb5e6f57c5a9bdaa40fa71ce7b4af30298fbab9ece9815b5d995ab6217c7d9"
+            ],
+            "version": "==4.3.2"
+        },
+        "wcwidth": {
+            "hashes": [
+                "sha256:3df37372226d6e63e1b1e1eda15c594bca98a22d33a23832a90998faa96bc65e",
+                "sha256:f4ebe71925af7b40a864553f761ed559b43544f8f71746c2d756c7fe788ade7c"
+            ],
+            "version": "==0.1.7"
+        },
+        "webencodings": {
+            "hashes": [
+                "sha256:a0af1213f3c2226497a97e2b3aa01a7e4bee4f403f95be16fc9acd2947514a78",
+                "sha256:b36a1c245f2d304965eb4e0a82848379241dc04b865afcc4aab16748587e1923"
+            ],
+            "version": "==0.5.1"
         }
     },
     "develop": {
@@ -213,10 +520,10 @@
         },
         "isort": {
             "hashes": [
-                "sha256:01cb7e1ca5e6c5b3f235f0385057f70558b70d2f00320208825fa62887292f43",
+                "sha256:1349c6f7c2a0f7539f5f2ace51a9a8e4a37086ce4de6f78f5f53fb041d0a3cd5",
-                "sha256:268067462aed7eb2a1e237fcb287852f22077de3fb07964e87e00f829eea2d1a"
+                "sha256:f09911f6eb114e5592abe635aded8bf3d2c3144ebcfcaf81ee32e7af7b7d1870"
             ],
-            "version": "==4.3.17"
+            "version": "==4.3.18"
         },
         "lazy-object-proxy": {
             "hashes": [
@@ -276,29 +583,28 @@
         },
         "typed-ast": {
             "hashes": [
-                "sha256:04894d268ba6eab7e093d43107869ad49e7b5ef40d1a94243ea49b352061b200",
+                "sha256:132eae51d6ef3ff4a8c47c393a4ef5ebf0d1aecc96880eb5d6c8ceab7017cc9b",
-                "sha256:16616ece19daddc586e499a3d2f560302c11f122b9c692bc216e821ae32aa0d0",
+                "sha256:18141c1484ab8784006c839be8b985cfc82a2e9725837b0ecfa0203f71c4e39d",
-                "sha256:252fdae740964b2d3cdfb3f84dcb4d6247a48a6abe2579e8029ab3be3cdc026c",
+                "sha256:2baf617f5bbbfe73fd8846463f5aeafc912b5ee247f410700245d68525ec584a",
-                "sha256:2af80a373af123d0b9f44941a46df67ef0ff7a60f95872412a145f4500a7fc99",
+                "sha256:3d90063f2cbbe39177e9b4d888e45777012652d6110156845b828908c51ae462",
-                "sha256:2c88d0a913229a06282b285f42a31e063c3bf9071ff65c5ea4c12acb6977c6a7",
+                "sha256:4304b2218b842d610aa1a1d87e1dc9559597969acc62ce717ee4dfeaa44d7eee",
-                "sha256:2ea99c029ebd4b5a308d915cc7fb95b8e1201d60b065450d5d26deb65d3f2bc1",
+                "sha256:4983ede548ffc3541bae49a82675996497348e55bafd1554dc4e4a5d6eda541a",
-                "sha256:3d2e3ab175fc097d2a51c7a0d3fda442f35ebcc93bb1d7bd9b95ad893e44c04d",
+                "sha256:5315f4509c1476718a4825f45a203b82d7fdf2a6f5f0c8f166435975b1c9f7d4",
-                "sha256:4766dd695548a15ee766927bf883fb90c6ac8321be5a60c141f18628fb7f8da8",
+                "sha256:6cdfb1b49d5345f7c2b90d638822d16ba62dc82f7616e9b4caa10b72f3f16649",
-                "sha256:56b6978798502ef66625a2e0f80cf923da64e328da8bbe16c1ff928c70c873de",
+                "sha256:7b325f12635598c604690efd7a0197d0b94b7d7778498e76e0710cd582fd1c7a",
-                "sha256:5cddb6f8bce14325b2863f9d5ac5c51e07b71b462361fd815d1d7706d3a9d682",
+                "sha256:8d3b0e3b8626615826f9a626548057c5275a9733512b137984a68ba1598d3d2f",
-                "sha256:644ee788222d81555af543b70a1098f2025db38eaa99226f3a75a6854924d4db",
+                "sha256:8f8631160c79f53081bd23446525db0bc4c5616f78d04021e6e434b286493fd7",
-                "sha256:64cf762049fc4775efe6b27161467e76d0ba145862802a65eefc8879086fc6f8",
+                "sha256:912de10965f3dc89da23936f1cc4ed60764f712e5fa603a09dd904f88c996760",
-                "sha256:68c362848d9fb71d3c3e5f43c09974a0ae319144634e7a47db62f0f2a54a7fa7",
+                "sha256:b010c07b975fe853c65d7bbe9d4ac62f1c69086750a574f6292597763781ba18",
-                "sha256:6c1f3c6f6635e611d58e467bf4371883568f0de9ccc4606f17048142dec14a1f",
+                "sha256:c908c10505904c48081a5415a1e295d8403e353e0c14c42b6d67f8f97fae6616",
-                "sha256:b213d4a02eec4ddf622f4d2fbc539f062af3788d1f332f028a2e19c42da53f15",
+                "sha256:c94dd3807c0c0610f7c76f078119f4ea48235a953512752b9175f9f98f5ae2bd",
-                "sha256:bb27d4e7805a7de0e35bd0cb1411bc85f807968b2b0539597a49a23b00a622ae",
+                "sha256:ce65dee7594a84c466e79d7fb7d3303e7295d16a83c22c7c4037071b059e2c21",
-                "sha256:c9d414512eaa417aadae7758bc118868cd2396b0e6138c1dd4fda96679c079d3",
+                "sha256:eaa9cfcb221a8a4c2889be6f93da141ac777eb8819f077e1d09fb12d00a09a93",
-                "sha256:f0937165d1e25477b01081c4763d2d9cdc3b18af69cb259dd4f640c9b900fe5e",
+                "sha256:f3376bc31bad66d46d44b4e6522c5c21976bf9bca4ef5987bb2bf727f4506cbb",
-                "sha256:fb96a6e2c11059ecf84e6741a319f93f683e440e341d4489c9b161eca251cf2a",
+                "sha256:f9202fa138544e13a4ec1a6792c35834250a85958fde1251b6a22e07d1260ae7"
-                "sha256:fc71d2d6ae56a091a8d94f33ec9d0f2001d1cb1db423d8b4355debfe9ce689b7"
             ],
             "markers": "implementation_name == 'cpython'",
-            "version": "==1.3.4"
+            "version": "==1.3.5"
         },
         "wrapt": {
             "hashes": [

examples/README.md

@@ -0,0 +1,12 @@
+# freesurfer-volume-reader examples
+
+View examples online with jupyter's
+[nbviewer](https://nbviewer.jupyter.org/github/fphammerle/freesurfer-volume-reader/tree/master/examples/)
+
+or locally:
+```sh
+pip3 install --user pipenv
+git clone https://github.com/fphammerle/freesurfer-volume-reader.git
+cd freesurfer-volume-reader/examples
+pipenv run jupyter notebook
+```

tests/ashs_test.py

@@ -102,12 +102,14 @@ def test_hippocampal_subfields_volume_file_read_volumes_dataframe_not_found():
     (os.path.join(SUBJECTS_DIR, 'bert'),
      {os.path.join(SUBJECTS_DIR, 'bert', 'final', 'bert_left_corr_nogray_volumes.txt'),
       os.path.join(SUBJECTS_DIR, 'bert', 'final', 'bert_left_corr_usegray_volumes.txt'),
+      os.path.join(SUBJECTS_DIR, 'bert', 'final', 'bert_left_heur_volumes.txt'),
       os.path.join(SUBJECTS_DIR, 'bert', 'final', 'bert_right_corr_nogray_volumes.txt')}),
     (SUBJECTS_DIR,
      {os.path.join(SUBJECTS_DIR, 'alice', 'final', 'alice_left_heur_volumes.txt'),
       os.path.join(SUBJECTS_DIR, 'alice', 'final', 'alice_left_corr_nogray_volumes.txt'),
       os.path.join(SUBJECTS_DIR, 'bert', 'final', 'bert_left_corr_nogray_volumes.txt'),
       os.path.join(SUBJECTS_DIR, 'bert', 'final', 'bert_left_corr_usegray_volumes.txt'),
+      os.path.join(SUBJECTS_DIR, 'bert', 'final', 'bert_left_heur_volumes.txt'),
       os.path.join(SUBJECTS_DIR, 'bert', 'final', 'bert_right_corr_nogray_volumes.txt')}),
 ])
 def test_hippocampal_subfields_volume_file_find(root_dir_path, expected_file_paths):

tests/subjects/all-hippocampal-volumes.csv

@@ -34,6 +34,13 @@ ashs,bert,right,nogray,ERC,789.013,,
 ashs,bert,right,nogray,PHC,2345.878,,
 ashs,bert,right,nogray,PRC,2345.67,,
 ashs,bert,right,nogray,SUB,457.781,,
+ashs,bert,left,,CA1,678.903,,
+ashs,bert,left,,CA2+3,123.458,,
+ashs,bert,left,,DG,901.236,,
+ashs,bert,left,,ERC,789.014,,
+ashs,bert,left,,PHC,2345.878,,
+ashs,bert,left,,PRC,2345.670,,
+ashs,bert,left,,SUB,457.781,,
 freesurfer-hipposf,alice,left,,Hippocampal_tail,173.456789,True,
 freesurfer-hipposf,alice,left,,subiculum,734.567891,True,
 freesurfer-hipposf,alice,left,,CA1,34.567891,True,

tests/subjects/ashs-hippocampal-volumes.csv

@@ -34,3 +34,10 @@ ashs,bert,nogray,right,ERC,789.013
 ashs,bert,nogray,right,PHC,2345.878
 ashs,bert,nogray,right,PRC,2345.670
 ashs,bert,nogray,right,SUB,457.781
+ashs,bert,,left,CA1,678.903
+ashs,bert,,left,CA2+3,123.458
+ashs,bert,,left,DG,901.236
+ashs,bert,,left,ERC,789.014
+ashs,bert,,left,PHC,2345.878
+ashs,bert,,left,PRC,2345.670
+ashs,bert,,left,SUB,457.781

tests/subjects/bert/ashs-hippocampal-volumes.csv

@@ -20,3 +20,10 @@ ashs,bert,nogray,right,ERC,789.013
 ashs,bert,nogray,right,PHC,2345.878
 ashs,bert,nogray,right,PRC,2345.670
 ashs,bert,nogray,right,SUB,457.781
+ashs,bert,,left,CA1,678.903
+ashs,bert,,left,CA2+3,123.458
+ashs,bert,,left,DG,901.236
+ashs,bert,,left,ERC,789.014
+ashs,bert,,left,PHC,2345.878
+ashs,bert,,left,PRC,2345.670
+ashs,bert,,left,SUB,457.781

tests/subjects/bert/final/bert_left_heur_volumes.txt

@@ -0,0 +1,7 @@
+bert left CA1 26 678.903
+bert left CA2+3 26 123.458
+bert left DG 25 901.236
+bert left ERC 18 789.014
+bert left PHC 16 2345.878
+bert left PRC 26 2345.670
+bert left SUB 26 457.781