Browse Source

adapt ASHS bert dummy test data to fix tests failing inadvertently due different order of rows in frame

https://travis-ci.org/fphammerle/freesurfer-volume-reader/jobs/528066839
Fabian Peter Hammerle 5 years ago
parent
commit
c6ed274451

+ 1 - 1
tests/ashs_test.py

@@ -54,7 +54,7 @@ def test_hippocampal_subfields_volume_file_init_invalid(volume_file_path):
      {'CA1': 678.901,
      {'CA1': 678.901,
       'CA2+3': 123.456,
       'CA2+3': 123.456,
       'DG': 901.234,
       'DG': 901.234,
-      'ERC': 678.901,
+      'ERC': 789.012,
       'PHC': 2345.876,
       'PHC': 2345.876,
       'PRC': 2345.678,
       'PRC': 2345.678,
       'SUB': 457.789}),
       'SUB': 457.789}),

+ 2 - 2
tests/subjects/all-hippocampal-volumes.csv

@@ -16,14 +16,14 @@ ashs,alice,left,,SUB,458.782,,
 ashs,bert,left,nogray,CA1,678.9010000000002,,
 ashs,bert,left,nogray,CA1,678.9010000000002,,
 ashs,bert,left,nogray,CA2+3,123.456,,
 ashs,bert,left,nogray,CA2+3,123.456,,
 ashs,bert,left,nogray,DG,901.234,,
 ashs,bert,left,nogray,DG,901.234,,
-ashs,bert,left,nogray,ERC,678.9010000000002,,
+ashs,bert,left,nogray,ERC,789.0120000000002,,
 ashs,bert,left,nogray,PHC,2345.876,,
 ashs,bert,left,nogray,PHC,2345.876,,
 ashs,bert,left,nogray,PRC,2345.678,,
 ashs,bert,left,nogray,PRC,2345.678,,
 ashs,bert,left,nogray,SUB,457.789,,
 ashs,bert,left,nogray,SUB,457.789,,
 ashs,bert,left,usegray,CA1,678.9019999999998,,
 ashs,bert,left,usegray,CA1,678.9019999999998,,
 ashs,bert,left,usegray,CA2+3,123.457,,
 ashs,bert,left,usegray,CA2+3,123.457,,
 ashs,bert,left,usegray,DG,901.235,,
 ashs,bert,left,usegray,DG,901.235,,
-ashs,bert,left,usegray,ERC,678.9019999999998,,
+ashs,bert,left,usegray,ERC,789.013,,
 ashs,bert,left,usegray,PHC,2345.877,,
 ashs,bert,left,usegray,PHC,2345.877,,
 ashs,bert,left,usegray,PRC,2345.679,,
 ashs,bert,left,usegray,PRC,2345.679,,
 ashs,bert,left,usegray,SUB,457.78,,
 ashs,bert,left,usegray,SUB,457.78,,

+ 2 - 2
tests/subjects/ashs-hippocampal-volumes.csv

@@ -16,14 +16,14 @@ ashs,alice,,left,SUB,458.782
 ashs,bert,nogray,left,CA1,678.901
 ashs,bert,nogray,left,CA1,678.901
 ashs,bert,nogray,left,CA2+3,123.456
 ashs,bert,nogray,left,CA2+3,123.456
 ashs,bert,nogray,left,DG,901.234
 ashs,bert,nogray,left,DG,901.234
-ashs,bert,nogray,left,ERC,678.901
+ashs,bert,nogray,left,ERC,789.012
 ashs,bert,nogray,left,PHC,2345.876
 ashs,bert,nogray,left,PHC,2345.876
 ashs,bert,nogray,left,PRC,2345.678
 ashs,bert,nogray,left,PRC,2345.678
 ashs,bert,nogray,left,SUB,457.789
 ashs,bert,nogray,left,SUB,457.789
 ashs,bert,usegray,left,CA1,678.902
 ashs,bert,usegray,left,CA1,678.902
 ashs,bert,usegray,left,CA2+3,123.457
 ashs,bert,usegray,left,CA2+3,123.457
 ashs,bert,usegray,left,DG,901.235
 ashs,bert,usegray,left,DG,901.235
-ashs,bert,usegray,left,ERC,678.902
+ashs,bert,usegray,left,ERC,789.013
 ashs,bert,usegray,left,PHC,2345.877
 ashs,bert,usegray,left,PHC,2345.877
 ashs,bert,usegray,left,PRC,2345.679
 ashs,bert,usegray,left,PRC,2345.679
 ashs,bert,usegray,left,SUB,457.780
 ashs,bert,usegray,left,SUB,457.780

+ 2 - 2
tests/subjects/bert/ashs-hippocampal-volumes.csv

@@ -2,14 +2,14 @@ source_type,subject,correction,hemisphere,subfield,volume_mm^3
 ashs,bert,nogray,left,CA1,678.901
 ashs,bert,nogray,left,CA1,678.901
 ashs,bert,nogray,left,CA2+3,123.456
 ashs,bert,nogray,left,CA2+3,123.456
 ashs,bert,nogray,left,DG,901.234
 ashs,bert,nogray,left,DG,901.234
-ashs,bert,nogray,left,ERC,678.901
+ashs,bert,nogray,left,ERC,789.012
 ashs,bert,nogray,left,PHC,2345.876
 ashs,bert,nogray,left,PHC,2345.876
 ashs,bert,nogray,left,PRC,2345.678
 ashs,bert,nogray,left,PRC,2345.678
 ashs,bert,nogray,left,SUB,457.789
 ashs,bert,nogray,left,SUB,457.789
 ashs,bert,usegray,left,CA1,678.902
 ashs,bert,usegray,left,CA1,678.902
 ashs,bert,usegray,left,CA2+3,123.457
 ashs,bert,usegray,left,CA2+3,123.457
 ashs,bert,usegray,left,DG,901.235
 ashs,bert,usegray,left,DG,901.235
-ashs,bert,usegray,left,ERC,678.902
+ashs,bert,usegray,left,ERC,789.013
 ashs,bert,usegray,left,PHC,2345.877
 ashs,bert,usegray,left,PHC,2345.877
 ashs,bert,usegray,left,PRC,2345.679
 ashs,bert,usegray,left,PRC,2345.679
 ashs,bert,usegray,left,SUB,457.780
 ashs,bert,usegray,left,SUB,457.780

+ 1 - 1
tests/subjects/bert/final/bert_left_corr_nogray_volumes.txt

@@ -1,7 +1,7 @@
 bert left CA1 26 678.901
 bert left CA1 26 678.901
 bert left CA2+3 26 123.456
 bert left CA2+3 26 123.456
 bert left DG 25 901.234
 bert left DG 25 901.234
-bert left ERC 18 678.901
+bert left ERC 18 789.012
 bert left PHC 16 2345.876
 bert left PHC 16 2345.876
 bert left PRC 26 2345.678
 bert left PRC 26 2345.678
 bert left SUB 26 457.789
 bert left SUB 26 457.789

+ 1 - 1
tests/subjects/bert/final/bert_left_corr_usegray_volumes.txt

@@ -1,7 +1,7 @@
 bert left CA1 26 678.902
 bert left CA1 26 678.902
 bert left CA2+3 26 123.457
 bert left CA2+3 26 123.457
 bert left DG 25 901.235
 bert left DG 25 901.235
-bert left ERC 18 678.902
+bert left ERC 18 789.013
 bert left PHC 16 2345.877
 bert left PHC 16 2345.877
 bert left PRC 26 2345.679
 bert left PRC 26 2345.679
 bert left SUB 26 457.780
 bert left SUB 26 457.780