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@@ -17,10 +17,45 @@
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"SUBJECT = 'bert'"
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]
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},
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+ {
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+ "cell_type": "markdown",
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+ "metadata": {},
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+ "source": [
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+ "## Intracranial Volume"
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+ ]
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+ },
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{
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"cell_type": "code",
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"execution_count": 2,
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"metadata": {},
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+ "outputs": [
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+ {
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+ "name": "stdout",
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+ "output_type": "stream",
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+ "text": [
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+ "1234560.0 mm^3\n"
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+ ]
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+ }
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+ ],
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+ "source": [
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+ "from freesurfer_volume_reader.ashs import IntracranialVolumeFile\n",
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+ "\n",
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+ "for volume_file in IntracranialVolumeFile.find(SUBJECTS_DIR):\n",
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+ " if volume_file.subject == SUBJECT:\n",
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+ " print(volume_file.read_volume_mm3(), 'mm^3')"
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+ ]
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+ },
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+ {
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+ "cell_type": "markdown",
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+ "metadata": {},
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+ "source": [
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+ "## Subfield Volumes"
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+ ]
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+ },
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+ {
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+ "cell_type": "code",
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+ "execution_count": 3,
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+ "metadata": {},
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"outputs": [
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{
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"data": {
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@@ -31,7 +66,7 @@
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" 'bert_left_corr_nogray_volumes.txt']"
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]
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},
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- "execution_count": 2,
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+ "execution_count": 3,
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"metadata": {},
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"output_type": "execute_result"
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}
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@@ -47,7 +82,7 @@
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},
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{
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"cell_type": "code",
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- "execution_count": 3,
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+ "execution_count": 4,
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"metadata": {},
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"outputs": [
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{
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@@ -132,7 +167,7 @@
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"4 PHC 2345.878 bert right nogray"
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]
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},
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- "execution_count": 3,
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+ "execution_count": 4,
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"metadata": {},
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"output_type": "execute_result"
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}
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@@ -145,7 +180,7 @@
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},
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{
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"cell_type": "code",
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- "execution_count": 4,
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+ "execution_count": 5,
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"metadata": {},
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"outputs": [
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{
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@@ -157,7 +192,7 @@
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"Name: correction, dtype: int64"
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]
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},
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- "execution_count": 4,
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+ "execution_count": 5,
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"metadata": {},
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"output_type": "execute_result"
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}
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@@ -169,7 +204,7 @@
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},
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{
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"cell_type": "code",
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- "execution_count": 5,
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+ "execution_count": 6,
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"metadata": {},
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"outputs": [
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{
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@@ -282,7 +317,7 @@
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"SUB 457.789 457.781 457.780 457.781"
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]
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},
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- "execution_count": 5,
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+ "execution_count": 6,
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"metadata": {},
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"output_type": "execute_result"
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}
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@@ -295,7 +330,7 @@
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},
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{
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"cell_type": "code",
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- "execution_count": 6,
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+ "execution_count": 7,
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"metadata": {},
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"outputs": [
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{
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@@ -1093,10 +1128,10 @@
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{
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"data": {
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"text/plain": [
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- "<matplotlib.axes._subplots.AxesSubplot at 0x7ff6715a74e0>"
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+ "<matplotlib.axes._subplots.AxesSubplot at 0x7fb6ca200208>"
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]
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},
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- "execution_count": 6,
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+ "execution_count": 7,
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"metadata": {},
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"output_type": "execute_result"
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}
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@@ -1133,7 +1168,7 @@
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"name": "python",
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"nbconvert_exporter": "python",
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"pygments_lexer": "ipython3",
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- "version": "3.6.7"
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+ "version": "3.7.3"
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}
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},
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"nbformat": 4,
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