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@@ -2,6 +2,12 @@
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Read hippocampal subfield volumes computed by Freesurfer
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Read hippocampal subfield volumes computed by Freesurfer
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https://surfer.nmr.mgh.harvard.edu/fswiki/HippocampalSubfields
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https://surfer.nmr.mgh.harvard.edu/fswiki/HippocampalSubfields
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+
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+>>> from freesurfer_volume_reader.freesurfer import HippocampalSubfieldsVolumeFile
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+>>>
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+>>> for volume_file in HippocampalSubfieldsVolumeFile.find('/my/freesurfer/subjects'):
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+>>> print(volume_file.read_volumes_mm3())
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+>>> print(volume_file.read_volumes_dataframe())
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"""
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"""
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import argparse
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import argparse
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@@ -19,7 +25,8 @@ def remove_group_names_from_regex(regex_pattern: str) -> str:
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def main():
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def main():
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- argparser = argparse.ArgumentParser(description=__doc__)
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+ argparser = argparse.ArgumentParser(description=__doc__,
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+ formatter_class=argparse.RawDescriptionHelpFormatter)
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argparser.add_argument('--filename-regex', type=re.compile,
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argparser.add_argument('--filename-regex', type=re.compile,
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default=remove_group_names_from_regex(
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default=remove_group_names_from_regex(
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HippocampalSubfieldsVolumeFile.FILENAME_PATTERN),
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HippocampalSubfieldsVolumeFile.FILENAME_PATTERN),
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