added changelog, add pylint-import-requirements to pipeline, upgrade dev env, fix linter warnings

https://github.com/fphammerle/freesurfer-surface/pull/31

.travis.yml

@@ -14,8 +14,9 @@ install:
 - pipenv graph
 
 script:
-- pipenv run pylint freesurfer_surface tests/*
 - pipenv run pytest --cov=freesurfer_surface --cov-report=term-missing --cov-fail-under=100
+- pipenv run pylint --load-plugins=pylint_import_requirements freesurfer_surface
+- pipenv run pylint tests/*
 
 after_success:
 - pip install coveralls

CHANGELOG.md

@@ -0,0 +1,65 @@
+# Changelog
+All notable changes to this project will be documented in this file.
+
+The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
+and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
+
+## [Unreleased]
+### Fixed
+- fix `ModuleNotFoundError` on `import freesurfer_surface.version`
+  for developers not installing package
+- `setlocale`: re-raise original exception
+  when the selected locale is not supported
+
+## [1.1.0] - 2019-05-23
+### Added
+* added static method `Surface.unite(surfaces)`
+* added command-line entry point / script `unite-freesurfer-surfaces`
+
+## [1.0.1] - 2019-05-23
+### Fixed
+- `Surface.find_borders()` failed on self-crossing borders
+
+## [1.0.0] - 2019-05-19
+## Added
+- method `Surface.find_borders()`
+- method `Surface.remove_unused_vertices()`
+- method `Surface.select_vertices(vertex_indices)`
+- method `Vertex.distance_mm(other_vertices)`
+- class `LineSegment`
+- class `PolygonalCircuit`
+
+## Changed
+* property `Triangle.vertex_indices` is now read-only
+
+## [0.2.2] - 2019-05-19
+### Fixed
+- fixed comparison & hashing of `Triangle` / `_PolygonalCircuit`
+  (`_PolygonalCircuit._normalize` now considers order of indices)
+
+## [0.2.1] - 2019-05-16
+### Fixed
+- fix formatting of project description on pypi
+
+## [0.2.0] - 2019-05-15
+### Added
+- added `PolygonalChain.adjacent_vertex_indices()`
+- `Surface.add_rectangle`: accept 3 or 4 vertex indices (previously only 3)
+
+### Changed
+- dervice `Vertex` from `numpy.ndarray` (previously `collections.namedtuple`)
+
+### Fixed
+* `Surface._find_label_border_segments`: failing on incompletely labelled set of vertices
+
+## [0.1.0] - 2019-05-12
+tagger Fabian Peter Hammerle <fabian@hammerle.me> 1557674236 +0200
+
+[Unreleased]: https://github.com/fphammerle/freesurfer-stats/compare/1.1.0...HEAD
+[1.1.0]: https://github.com/fphammerle/freesurfer-stats/compare/1.0.1...1.1.0
+[1.0.1]: https://github.com/fphammerle/freesurfer-stats/compare/1.0.0...1.0.1
+[1.0.0]: https://github.com/fphammerle/freesurfer-stats/compare/0.2.2...1.0.0
+[0.2.2]: https://github.com/fphammerle/freesurfer-stats/compare/0.2.1...0.2.2
+[0.2.1]: https://github.com/fphammerle/freesurfer-stats/compare/0.2.0...0.2.1
+[0.2.0]: https://github.com/fphammerle/freesurfer-stats/compare/0.1.0...0.2.0
+[0.1.0]: https://github.com/fphammerle/freesurfer-stats/releases/tag/0.1.0

Pipfile

@@ -6,16 +6,25 @@ name = "pypi"
 [packages]
 freesurfer-surface = {editable = true, path = "."}
 
+# python3.5 compatibility
+# https://github.com/numpy/numpy/commit/fbcb58ca2c17217f5dc85cb669ea651b7799b60c#diff-60f61ab7a8d1910d86d9fda2261620314edcae5894d5aaa236b821c7256badd7R30
+numpy = "<1.19"
+
 [dev-packages]
-pylint = ">=2.3.0,<3"
-pytest = "<5"
-pytest-cov = "<3,>=2"
+pylint = ">=2.3.0"
+pylint-import-requirements = "*"
+pytest = "*"
+pytest-cov = "*"
 "autopep8" = "<2"
+
+# python3.5 compatibility
 isort = "<5"
-# >=1.4.0 python3.8
-typed-ast = ">=1.4.0"
-# <2 python3.5
+# workaround https://github.com/pytest-dev/pytest/issues/3953
+pathlib2 = {version = "*", markers="python_version < '3.6'"}
+# https://github.com/jaraco/zipp/commit/05a3c52b4d41690e0471a2e283cffb500dc0329a
 zipp = "<2"
 
 [requires]
 python_version = "3"
+
+# Pipfile syntax: https://github.com/pypa/pipfile#pipfile

Pipfile.lock

@@ -1,7 +1,7 @@
 {
     "_meta": {
         "hash": {
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         },
         "pipfile-spec": 6,
         "requires": {
@@ -22,103 +22,106 @@
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+            "hashes": [
+                "sha256:011e24c64b7f47f6ebd835bb12a743f2fbe9a26d4cecaa7f53bc4f35ee9da8b3",
+                "sha256:bc3af051d7d14b2ee5ef9969666def0cd1a000e121eaea580d4a313df4b37f32"
+            ],
+            "version": "==1.1.1"
         },
         "isort": {
             "hashes": [
@@ -161,20 +164,21 @@
             ],
             "version": "==0.6.1"
         },
-        "more-itertools": {
+        "packaging": {
             "hashes": [
-                "sha256:5dd8bcf33e5f9513ffa06d5ad33d78f31e1931ac9a18f33d37e77a180d393a7c",
-                "sha256:b1ddb932186d8a6ac451e1d95844b382f55e12686d51ca0c68b6f61f2ab7a507"
+                "sha256:4357f74f47b9c12db93624a82154e9b120fa8293699949152b22065d556079f8",
+                "sha256:998416ba6962ae7fbd6596850b80e17859a5753ba17c32284f67bfff33784181"
             ],
-            "markers": "python_version > '2.7'",
-            "version": "==8.2.0"
+            "version": "==20.4"
         },
-        "packaging": {
+        "pathlib2": {
             "hashes": [
-                "sha256:170748228214b70b672c581a3dd610ee51f733018650740e98c7df862a583f73",
-                "sha256:e665345f9eef0c621aa0bf2f8d78cf6d21904eef16a93f020240b704a57f1334"
+                "sha256:0ec8205a157c80d7acc301c0b18fbd5d44fe655968f5d947b6ecef5290fc35db",
+                "sha256:6cd9a47b597b37cc57de1c05e56fb1a1c9cc9fab04fe78c29acd090418529868"
             ],
-            "version": "==20.1"
+            "index": "pypi",
+            "markers": "python_version < '3.6'",
+            "version": "==2.3.5"
         },
         "pluggy": {
             "hashes": [
@@ -185,103 +189,84 @@
         },
         "py": {
             "hashes": [
-                "sha256:5e27081401262157467ad6e7f851b7aa402c5852dbcb3dae06768434de5752aa",
-                "sha256:c20fdd83a5dbc0af9efd622bee9a5564e278f6380fffcacc43ba6f43db2813b0"
+                "sha256:366389d1db726cd2fcfc79732e75410e5fe4d31db13692115529d34069a043c2",
+                "sha256:9ca6883ce56b4e8da7e79ac18787889fa5206c79dcc67fb065376cd2fe03f342"
             ],
-            "version": "==1.8.1"
+            "version": "==1.9.0"
         },
         "pycodestyle": {
             "hashes": [
-                "sha256:95a2219d12372f05704562a14ec30bc76b05a5b297b21a5dfe3f6fac3491ae56",
-                "sha256:e40a936c9a450ad81df37f549d676d127b1b66000a6c500caa2b085bc0ca976c"
+                "sha256:2295e7b2f6b5bd100585ebcb1f616591b652db8a741695b3d8f5d28bdc934367",
+                "sha256:c58a7d2815e0e8d7972bf1803331fb0152f867bd89adf8a01dfd55085434192e"
             ],
-            "version": "==2.5.0"
+            "version": "==2.6.0"
         },
         "pylint": {
             "hashes": [
-                "sha256:3db5468ad013380e987410a8d6956226963aed94ecb5f9d3a28acca6d9ac36cd",
-                "sha256:886e6afc935ea2590b462664b161ca9a5e40168ea99e5300935f6591ad467df4"
+                "sha256:bb4a908c9dadbc3aac18860550e870f58e1a02c9f2c204fdf5693d73be061210",
+                "sha256:bfe68f020f8a0fece830a22dd4d5dddb4ecc6137db04face4c3420a46a52239f"
+            ],
+            "index": "pypi",
+            "version": "==2.6.0"
+        },
+        "pylint-import-requirements": {
+            "hashes": [
+                "sha256:39d0993baa0991c2c6258d310aacd5f69c850ba59cb3d2ae8aa69886886b7135",
+                "sha256:bc138263bf1f79d8d1bf3d3f6786248024a71b4202cd19a189f1346f3e5b20a7"
             ],
             "index": "pypi",
-            "version": "==2.4.4"
+            "version": "==2.0.5"
         },
         "pyparsing": {
             "hashes": [
-                "sha256:4c830582a84fb022400b85429791bc551f1f4871c33f23e44f353119e92f969f",
-                "sha256:c342dccb5250c08d45fd6f8b4a559613ca603b57498511740e65cd11a2e7dcec"
+                "sha256:c203ec8783bf771a155b207279b9bccb8dea02d8f0c9e5f8ead507bc3246ecc1",
+                "sha256:ef9d7589ef3c200abe66653d3f1ab1033c3c419ae9b9bdb1240a85b024efc88b"
             ],
-            "version": "==2.4.6"
+            "version": "==2.4.7"
         },
         "pytest": {
             "hashes": [
-                "sha256:19e8f75eac01dd3f211edd465b39efbcbdc8fc5f7866d7dd49fedb30d8adf339",
-                "sha256:c77a5f30a90e0ce24db9eaa14ddfd38d4afb5ea159309bdd2dae55b931bc9324"
+                "sha256:7a8190790c17d79a11f847fba0b004ee9a8122582ebff4729a082c109e81a4c9",
+                "sha256:8f593023c1a0f916110285b6efd7f99db07d59546e3d8c36fc60e2ab05d3be92"
             ],
             "index": "pypi",
-            "version": "==4.6.9"
+            "version": "==6.1.1"
         },
         "pytest-cov": {
             "hashes": [
-                "sha256:cc6742d8bac45070217169f5f72ceee1e0e55b0221f54bcf24845972d3a47f2b",
-                "sha256:cdbdef4f870408ebdbfeb44e63e07eb18bb4619fae852f6e760645fa36172626"
+                "sha256:45ec2d5182f89a81fc3eb29e3d1ed3113b9e9a873bcddb2a71faaab066110191",
+                "sha256:47bd0ce14056fdd79f93e1713f88fad7bdcc583dcd7783da86ef2f085a0bb88e"
             ],
             "index": "pypi",
-            "version": "==2.8.1"
+            "version": "==2.10.1"
         },
         "six": {
             "hashes": [
-                "sha256:236bdbdce46e6e6a3d61a337c0f8b763ca1e8717c03b369e87a7ec7ce1319c0a",
-                "sha256:8f3cd2e254d8f793e7f3d6d9df77b92252b52637291d0f0da013c76ea2724b6c"
+                "sha256:30639c035cdb23534cd4aa2dd52c3bf48f06e5f4a941509c8bafd8ce11080259",
+                "sha256:8b74bedcbbbaca38ff6d7491d76f2b06b3592611af620f8426e82dddb04a5ced"
             ],
-            "version": "==1.14.0"
-        },
-        "typed-ast": {
-            "hashes": [
-                "sha256:0666aa36131496aed8f7be0410ff974562ab7eeac11ef351def9ea6fa28f6355",
-                "sha256:0c2c07682d61a629b68433afb159376e24e5b2fd4641d35424e462169c0a7919",
-                "sha256:249862707802d40f7f29f6e1aad8d84b5aa9e44552d2cc17384b209f091276aa",
-                "sha256:24995c843eb0ad11a4527b026b4dde3da70e1f2d8806c99b7b4a7cf491612652",
-                "sha256:269151951236b0f9a6f04015a9004084a5ab0d5f19b57de779f908621e7d8b75",
-                "sha256:4083861b0aa07990b619bd7ddc365eb7fa4b817e99cf5f8d9cf21a42780f6e01",
-                "sha256:498b0f36cc7054c1fead3d7fc59d2150f4d5c6c56ba7fb150c013fbc683a8d2d",
-                "sha256:4e3e5da80ccbebfff202a67bf900d081906c358ccc3d5e3c8aea42fdfdfd51c1",
-                "sha256:6daac9731f172c2a22ade6ed0c00197ee7cc1221aa84cfdf9c31defeb059a907",
-                "sha256:715ff2f2df46121071622063fc7543d9b1fd19ebfc4f5c8895af64a77a8c852c",
-                "sha256:73d785a950fc82dd2a25897d525d003f6378d1cb23ab305578394694202a58c3",
-                "sha256:8c8aaad94455178e3187ab22c8b01a3837f8ee50e09cf31f1ba129eb293ec30b",
-                "sha256:8ce678dbaf790dbdb3eba24056d5364fb45944f33553dd5869b7580cdbb83614",
-                "sha256:aaee9905aee35ba5905cfb3c62f3e83b3bec7b39413f0a7f19be4e547ea01ebb",
-                "sha256:bcd3b13b56ea479b3650b82cabd6b5343a625b0ced5429e4ccad28a8973f301b",
-                "sha256:c9e348e02e4d2b4a8b2eedb48210430658df6951fa484e59de33ff773fbd4b41",
-                "sha256:d205b1b46085271b4e15f670058ce182bd1199e56b317bf2ec004b6a44f911f6",
-                "sha256:d43943ef777f9a1c42bf4e552ba23ac77a6351de620aa9acf64ad54933ad4d34",
-                "sha256:d5d33e9e7af3b34a40dc05f498939f0ebf187f07c385fd58d591c533ad8562fe",
-                "sha256:fc0fea399acb12edbf8a628ba8d2312f583bdbdb3335635db062fa98cf71fca4",
-                "sha256:fe460b922ec15dd205595c9b5b99e2f056fd98ae8f9f56b888e7a17dc2b757e7"
-            ],
-            "index": "pypi",
-            "version": "==1.4.1"
+            "version": "==1.15.0"
         },
-        "wcwidth": {
+        "toml": {
             "hashes": [
-                "sha256:8fd29383f539be45b20bd4df0dc29c20ba48654a41e661925e612311e9f3c603",
-                "sha256:f28b3e8a6483e5d49e7f8949ac1a78314e740333ae305b4ba5defd3e74fb37a8"
+                "sha256:926b612be1e5ce0634a2ca03470f95169cf16f939018233a670519cb4ac58b0f",
+                "sha256:bda89d5935c2eac546d648028b9901107a595863cb36bae0c73ac804a9b4ce88"
             ],
-            "version": "==0.1.8"
+            "version": "==0.10.1"
         },
         "wrapt": {
             "hashes": [
-                "sha256:565a021fd19419476b9362b05eeaa094178de64f8361e44468f9e9d7843901e1"
+                "sha256:b62ffa81fb85f4332a4f609cab4ac40709470da05643a082ec1eb88e6d9b97d7"
             ],
-            "version": "==1.11.2"
+            "version": "==1.12.1"
         },
         "zipp": {
             "hashes": [
-                "sha256:15428d652e993b6ce86694c3cccf0d71aa7afdc6ef1807fa25a920e9444e0281",
-                "sha256:d9d2efe11d3a3fb9184da550d35bd1319dc8e30a63255927c82bb42fca1f4f7c"
+                "sha256:c70410551488251b0fee67b460fb9a536af8d6f9f008ad10ac51f615b6a521b1",
+                "sha256:e0d9e63797e483a30d27e09fffd308c59a700d365ec34e93cc100844168bf921"
             ],
             "index": "pypi",
-            "version": "==1.1.0"
+            "version": "==1.2.0"
         }
     }
 }

freesurfer_surface/__init__.py

@@ -65,8 +65,8 @@ def setlocale(temporary_locale):
     try:
         yield locale.setlocale(locale.LC_ALL, temporary_locale)
     except locale.Error as exc:
-        if str(exc) == 'unsupported locale setting':
-            raise UnsupportedLocaleSettingError(temporary_locale)
+        if str(exc) == "unsupported locale setting":
+            raise UnsupportedLocaleSettingError(temporary_locale) from exc
         raise exc  # pragma: no cover
     finally:
         locale.setlocale(locale.LC_ALL, primary_locale)

tests/test_label.py

@@ -4,7 +4,6 @@ from freesurfer_surface import Label
 
 
 @pytest.mark.parametrize(('red', 'green', 'blue', 'transparency', 'color_code'), [
-    # pylint: disable=bad-whitespace
     (220,  20,  20,   0,  1316060),
     ( 60,  20, 220,   0, 14423100),
     ( 75,  50, 125,   0,  8204875),
@@ -23,7 +22,6 @@ def test_color_code_unknown():
 
 
 @pytest.mark.parametrize(('red', 'green', 'blue', 'hex_color_code'), [
-    # pylint: disable=bad-whitespace
     (  0,   0,   0, '#000000'),
     (255, 255, 255, '#ffffff'),
     (255,   0,   0, '#ff0000'),