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freesurfer-stats
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lh.BA_exvivo.stats

lh.BA_exvivo.stats 4.2 KB
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  1. # Table of FreeSurfer cortical parcellation anatomical statistics 
    2. 

  2. # 
    3. 

  3. # CreationTime 2020/05/04-22:22:50-GMT
    4. 

  4. # generating_program mris_anatomical_stats
    5. 

  5. # cvs_version 7.0.0
    6. 

  6. # mrisurf.c-cvs_version 7.0.0
    7. 

  7. # cmdline mris_anatomical_stats -th3 -mgz -f ../stats/lh.BA_exvivo.stats -b -a ./lh.BA_exvivo.annot -c ./BA_exvivo.ctab output lh white 
    8. 

  8. # sysname  Linux
    9. 

  9. # hostname nid00762
    10. 

  10. # machine  x86_64
    11. 

  11. # user     hayashis
    12. 

  12. # 
    13. 

  13. # SUBJECTS_DIR /N/dc2/scratch/hayashis/bigred3-workflows/5eb0689676c10ead933d673c/5eb068b076c10e7b013d673f
    14. 

  14. # anatomy_type surface
    15. 

  15. # subjectname output
    16. 

  16. # hemi lh
    17. 

  17. # AnnotationFile ./lh.BA_exvivo.annot
    18. 

  18. # AnnotationFileTimeStamp 2020/05/04 22:22:46
    19. 

  19. # Measure Cortex, NumVert, Number of Vertices, 127765, unitless
    20. 

  20. # Measure Cortex, WhiteSurfArea, White Surface Total Area, 90204.3, mm^2
    21. 

  21. # BrainVolStatsFixed-NotNeeded because voxelvolume=1mm3
    22. 

  22. # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1169408.000000, mm^3
    23. 

  23. # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 1157593.000000, mm^3
    24. 

  24. # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 1157593.000000, mm^3
    25. 

  25. # Measure Cortex, CortexVol, Total cortical gray matter volume, 454587.696158, mm^3
    26. 

  26. # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 1023873.000000, mm^3
    27. 

  27. # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 1012058.000000, mm^3
    28. 

  28. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1420434.160521, mm^3
    29. 

  29. # NTableCols 10
    30. 

  30. # TableCol  1 ColHeader StructName
    31. 

  31. # TableCol  1 FieldName Structure Name
    32. 

  32. # TableCol  1 Units     NA
    33. 

  33. # TableCol  2 ColHeader NumVert
    34. 

  34. # TableCol  2 FieldName Number of Vertices
    35. 

  35. # TableCol  2 Units     unitless
    36. 

  36. # TableCol  3 ColHeader SurfArea
    37. 

  37. # TableCol  3 FieldName Surface Area
    38. 

  38. # TableCol  3 Units     mm^2
    39. 

  39. # TableCol  4 ColHeader GrayVol
    40. 

  40. # TableCol  4 FieldName Gray Matter Volume
    41. 

  41. # TableCol  4 Units     mm^3
    42. 

  42. # TableCol  5 ColHeader ThickAvg 
    43. 

  43. # TableCol  5 FieldName Average Thickness
    44. 

  44. # TableCol  5 Units     mm
    45. 

  45. # TableCol  6 ColHeader ThickStd
    46. 

  46. # TableCol  6 FieldName Thickness StdDev
    47. 

  47. # TableCol  6 Units     mm 
    48. 

  48. # TableCol  7 ColHeader MeanCurv
    49. 

  49. # TableCol  7 FieldName Integrated Rectified Mean Curvature
    50. 

  50. # TableCol  7 Units     mm^-1
    51. 

  51. # TableCol  8 ColHeader GausCurv 
    52. 

  52. # TableCol  8 FieldName Integrated Rectified Gaussian Curvature
    53. 

  53. # TableCol  8 Units     mm^-2
    54. 

  54. # TableCol  9 ColHeader  FoldInd
    55. 

  55. # TableCol  9 FieldName  Folding Index 
    56. 

  56. # TableCol  9 Units      unitless 
    57. 

  57. # TableCol 10 ColHeader CurvInd
    58. 

  58. # TableCol 10 FieldName Intrinsic Curvature Index
    59. 

  59. # TableCol 10 Units     unitless
    60. 

  60. # ColHeaders StructName NumVert SurfArea GrayVol ThickAvg ThickStd MeanCurv GausCurv FoldInd CurvInd
    61. 

  61. BA1_exvivo                               1091    779   2228  2.233 0.587     0.140     0.032       13     1.5
    62. 

  62. BA2_exvivo                               3956   2761   6357  2.112 0.581     0.126     0.027       39     4.4
    63. 

  63. BA3a_exvivo                              1132    726    973  1.785 0.396     0.129     0.028       10     1.3
    64. 

  64. BA3b_exvivo                              2250   1572   3226  1.811 0.557     0.112     0.025       18     2.3
    65. 

  65. BA4a_exvivo                              1849   1082   3167  2.671 0.626     0.099     0.022       11     1.7
    66. 

  66. BA4p_exvivo                              1313    932   1786  2.033 0.504     0.116     0.026        8     1.5
    67. 

  67. BA6_exvivo                              10247   6816  22620  2.873 0.634     0.111     0.023       82     9.7
    68. 

  68. BA44_exvivo                              2571   1892   5119  2.394 0.596     0.121     0.024       25     2.8
    69. 

  69. BA45_exvivo                              2876   2112   6879  2.597 0.807     0.131     0.033       30     4.0
    70. 

  70. V1_exvivo                                3587   2681   4840  1.791 0.478     0.151     0.039       45     5.8
    71. 

  71. V2_exvivo                                7987   5971  13181  2.067 0.540     0.155     0.039      108    13.2
    72. 

  72. MT_exvivo                                1812   1342   3308  2.268 0.545     0.140     0.032       21     2.5
    73. 

  73. perirhinal_exvivo                         572    418   1747  3.036 0.856     0.115     0.031        5     0.8
    74. 

  74. entorhinal_exvivo                         544    350   1553  2.938 1.298     0.109     0.032        6     0.7
    75.